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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56172.1
DDBJ      :             putative ribose 5-phosphate isomerase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  502/915 : Eukaryota  39/199 : Viruses  0/175   --->[See Alignment]
c.121.1
:157 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->155 2vvpA PDBj 1e-72 80.6 %
:RPS:PDB   2->147 3c5yH PDBj 7e-13 16.2 %
:RPS:SCOP  1->155 1uslA  c.121.1.1 * 7e-28 80.6 %
:HMM:SCOP  1->156 1uslA_ c.121.1.1 * 2.2e-56 42.9 %
:RPS:PFM   2->143 PF02502 * LacAB_rpiB 7e-29 47.1 %
:HMM:PFM   2->142 PF02502 * LacAB_rpiB 7.5e-47 43.9 139/140  
:BLT:SWISS 1->155 RPIB_MYCTU 4e-72 80.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56172.1 GT:GENE BAD56172.1 GT:PRODUCT putative ribose 5-phosphate isomerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1484294..1484767 GB:FROM 1484294 GB:TO 1484767 GB:DIRECTION + GB:PRODUCT putative ribose 5-phosphate isomerase GB:PROTEIN_ID BAD56172.1 LENGTH 157 SQ:AASEQ MRVYLGADHAGFELKNHVKAHLEQAGHEVVDCGALEYDALDDYPAFCIEAARRTVADPGSLGLVFGGSGNGEQIAANKVPGARCALAWSVETAKLAREHNNAQLIGIGGRMHSTEEALAIVDAFLATPWSNEERHQRRIDILAEYEKTGVAPAVPAY GT:EXON 1|1-157:0| BL:SWS:NREP 1 BL:SWS:REP 1->155|RPIB_MYCTU|4e-72|80.6|155/162| BL:PDB:NREP 1 BL:PDB:REP 1->155|2vvpA|1e-72|80.6|155/157| RP:PDB:NREP 1 RP:PDB:REP 2->147|3c5yH|7e-13|16.2|142/204| RP:PFM:NREP 1 RP:PFM:REP 2->143|PF02502|7e-29|47.1|140/140|LacAB_rpiB| HM:PFM:NREP 1 HM:PFM:REP 2->142|PF02502|7.5e-47|43.9|139/140|LacAB_rpiB| GO:PFM:NREP 1 GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02502|IPR003500| RP:SCP:NREP 1 RP:SCP:REP 1->155|1uslA|7e-28|80.6|155/156|c.121.1.1| HM:SCP:REP 1->156|1uslA_|2.2e-56|42.9|156/157|c.121.1.1|1/1|Ribose/Galactose isomerase RpiB/AlsB| OP:NHOMO 686 OP:NHOMOORG 543 OP:PATTERN --1-------------1--------------------------------------------------- 1231111111111111111-111112111111111111111111331111113121111111121221211-------1111-1111111111111---111112111-2---------------11111111121111--1121-1-------------------1--1------------------111-111111111111111112111111111111-1344454411122222222222222211212---11--1------22-------212232222222222222222223333333332233111---311411143111111111122111311111212111111111-111121111141121--------------------111111111111---1-----1---1---11122122------------111--------1--1-113--11111111--1111-111111111111111111------------1111----1111--------------1----1-1--1----------------------1-111111111111111112111111211-121111111111111111111111111----2-------1--------------------------------1-1-1--1--11111----111111-1--1-111112111-1--1---------------------------11111111111-------------1--2----2-1-------11----------1-----------------1----------------------------------------11111111--------1-1----1-1111111111-111111111111111111111 --------2111--1111---------11----11-111-111111----1-11--1----11-1---------------------------1-1-1111---------1---------------------------------------------------------------------------1--111-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 155 STR:RPRED 98.7 SQ:SECSTR cEEEEcccGGGGGGHHHHHHHHGGGTcEEEEcccccTTccccccHHHHHHHHHHHHHTccEccEEEEEcccHHHHHTTTTTccEEEcccHHHHHHHHHHTcccEEEEccTTccTTHHHHHHHHHHHHHcccccccccGGGHHHHHHHHccccccc## DISOP:02AL 148-157| PSIPRED cEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHcccccEEEEEEEcHHHHHHHHHHcccEEEEEccEEccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccc //