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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56177.1
DDBJ      :             putative peptidyl-prolyl cis-trans isomerase
Swiss-Prot:TIG_NOCFA    RecName: Full=Trigger factor;         Short=TF;

Homologs  Archaea  0/68 : Bacteria  874/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
a.223.1d.241.2d.26.1
:465 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->320 1t11A PDBj 4e-39 29.6 %
:RPS:PDB   14->112 2d3o1 PDBj 9e-26 33.7 %
:RPS:PDB   134->250 3chxA PDBj 5e-19 6.0 %
:RPS:SCOP  6->118 1omsA  d.241.2.1 * 8e-31 25.0 %
:RPS:SCOP  116->267 1jvwA  d.26.1.1 * 1e-15 12.6 %
:RPS:SCOP  248->391 1w26A1  a.223.1.1 * 1e-20 23.1 %
:HMM:SCOP  3->132 1t11A2 d.241.2.1 * 2.3e-39 46.5 %
:HMM:SCOP  135->246 1w26A3 d.26.1.1 * 1.3e-24 38.4 %
:HMM:SCOP  247->440 1w26A1 a.223.1.1 * 1.4e-43 34.3 %
:RPS:PFM   6->147 PF05697 * Trigger_N 2e-24 43.0 %
:RPS:PFM   162->217 PF00254 * FKBP_C 4e-04 37.5 %
:RPS:PFM   261->391 PF05698 * Trigger_C 8e-14 36.6 %
:HMM:PFM   4->148 PF05697 * Trigger_N 6.9e-45 41.0 144/145  
:HMM:PFM   260->417 PF05698 * Trigger_C 3.3e-43 37.3 158/162  
:HMM:PFM   159->217 PF00254 * FKBP_C 2.2e-10 33.9 59/96  
:BLT:SWISS 1->439 TIG_NOCFA 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56177.1 GT:GENE BAD56177.1 GT:PRODUCT putative peptidyl-prolyl cis-trans isomerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1490932..1492329 GB:FROM 1490932 GB:TO 1492329 GB:DIRECTION + GB:PRODUCT putative peptidyl-prolyl cis-trans isomerase GB:PROTEIN_ID BAD56177.1 LENGTH 465 SQ:AASEQ MSVKSTVEQLSPTRVRINVEVPFEELKPDFDRAYKALAKQVRIPGFRPGKAPAKLLEARLGRGAILEQVVNDVLPARYSEAVTTSEVKVIGQPDIEITKIEDGQEFAFSAEVDVRPEIALPDYADLEVTVDAFTIGDEDIEEQLNSLRQRFGTLTGVERPVQEGDFVSIDLSATVDGQEVPEASTTGLSHEVGSGQLIEGLDEALIGLSAGESKEFTSTLVAGEHAGKEAVITVTVQSVKERELPEADDEFAQLASEFDTLEELKADLRSRVERVKKVQQAGEIRDKVLEALLEKTEVPLPEKVVQAEIDAVLHDAVHGFDHDEAKLAEALEAQGSSRAEFDKDTKEAAEKSVKTQLLLDAIAEAEGTQVGQEELTERILFQAQRYGMAPEQFIQQVQQAGQLGAVFADVRRGKALAGVVGKVKVTDSEGNTVDTAEMFGEPAAEPEQADAAQAGDAEKAAADSE GT:EXON 1|1-465:0| SW:ID TIG_NOCFA SW:DE RecName: Full=Trigger factor; Short=TF; SW:GN Name=tig; OrderedLocusNames=NFA_13320; SW:KW Cell cycle; Cell division; Chaperone; Complete proteome; Isomerase;Rotamase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->439|TIG_NOCFA|0.0|100.0|439/465| GO:SWS:NREP 5 GO:SWS GO:0007049|"GO:cell cycle"|Cell cycle| GO:SWS GO:0051301|"GO:cell division"|Cell division| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0003755|"GO:peptidyl-prolyl cis-trans isomerase activity"|Rotamase| GO:SWS GO:0006457|"GO:protein folding"|Rotamase| SEG 392->407|qfiqqvqqagqlgavf| SEG 413->425|gkalagvvgkvkv| SEG 440->462|gepaaepeqadaaqagdaekaaa| BL:PDB:NREP 1 BL:PDB:REP 6->320|1t11A|4e-39|29.6|311/376| RP:PDB:NREP 2 RP:PDB:REP 14->112|2d3o1|9e-26|33.7|98/100| RP:PDB:REP 134->250|3chxA|5e-19|6.0|117/362| RP:PFM:NREP 3 RP:PFM:REP 6->147|PF05697|2e-24|43.0|142/146|Trigger_N| RP:PFM:REP 162->217|PF00254|4e-04|37.5|56/91|FKBP_C| RP:PFM:REP 261->391|PF05698|8e-14|36.6|131/161|Trigger_C| HM:PFM:NREP 3 HM:PFM:REP 4->148|PF05697|6.9e-45|41.0|144/145|Trigger_N| HM:PFM:REP 260->417|PF05698|3.3e-43|37.3|158/162|Trigger_C| HM:PFM:REP 159->217|PF00254|2.2e-10|33.9|59/96|FKBP_C| GO:PFM:NREP 5 GO:PFM GO:0006457|"GO:protein folding"|PF05697|IPR008881| GO:PFM GO:0015031|"GO:protein transport"|PF05697|IPR008881| GO:PFM GO:0006457|"GO:protein folding"|PF00254|IPR001179| GO:PFM GO:0006457|"GO:protein folding"|PF05698|IPR008880| GO:PFM GO:0015031|"GO:protein transport"|PF05698|IPR008880| RP:SCP:NREP 3 RP:SCP:REP 6->118|1omsA|8e-31|25.0|112/115|d.241.2.1| RP:SCP:REP 116->267|1jvwA|1e-15|12.6|151/160|d.26.1.1| RP:SCP:REP 248->391|1w26A1|1e-20|23.1|134/185|a.223.1.1| HM:SCP:REP 3->132|1t11A2|2.3e-39|46.5|129/129|d.241.2.1|1/1|Trigger factor ribosome-binding domain| HM:SCP:REP 135->246|1w26A3|1.3e-24|38.4|112/116|d.26.1.1|1/1|FKBP-like| HM:SCP:REP 247->440|1w26A1|1.4e-43|34.3|181/0|a.223.1.1|1/1|Triger factor/SurA peptide-binding domain-like| OP:NHOMO 910 OP:NHOMOORG 887 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111221-111111----------1--1-1-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111411111321123111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111-111111111111111111111111111-11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1111111-11111111111-1--111-111111111111111111--1-1-111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-1-8-11--3112-11-1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 324 STR:RPRED 69.7 SQ:SECSTR #####EEEEccTTcEEEEEcccGGGTHHHHHHHHHHHHTTcccTTccTTccccTTHHHHTTTTccHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccEEEEEEcccccccTTcTTcEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccTTccccccTTcTccccccccccTTccccccEEEEccHHHHTTcGGGGcccccEEEEcccccccEEEEcccccEEEccccccccEEHcccEEEEEEETTEEEEEcccTTTTccEEEEEEEEEEEEcHHEEEccHHHHHHTcccccTccTTccTT######################################################################################################################################## DISOP:02AL 316-334, 385-387, 440-465| PSIPRED cEEEEEEEEEcccEEEEEEEEcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEEEEccEEcccccccccEEEEccccccHHHHHHccccccccEEEEEcccccHHHccccEEEEEEEEEEEEcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccHHHHcccccccHHHHcccccccccHHHHccc //