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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56190.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  405/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.58.32
:524 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->523 2uuuB PDBj 2e-63 34.3 %
:RPS:PDB   43->524 1e8gA PDBj 5e-38 12.1 %
:RPS:SCOP  57->275 1ahuA2  d.145.1.1 * 1e-25 15.6 %
:RPS:SCOP  305->524 1f0xA1  d.58.32.2 * 2e-13 13.5 %
:HMM:SCOP  50->275 1f0xA2 d.145.1.1 * 2.5e-52 40.2 %
:HMM:SCOP  248->304 1f0xA1 d.58.32.2 * 0.00029 26.3 %
:HMM:SCOP  278->524 1e8gA1 d.58.32.1 * 1e-40 25.9 %
:RPS:PFM   98->236 PF01565 * FAD_binding_4 1e-05 36.6 %
:RPS:PFM   456->522 PF02913 * FAD-oxidase_C 8e-08 35.8 %
:HMM:PFM   275->523 PF02913 * FAD-oxidase_C 1.9e-53 33.2 238/249  
:HMM:PFM   97->234 PF01565 * FAD_binding_4 2.7e-37 41.7 132/138  
:BLT:SWISS 3->524 ADAS_DICDI 2e-72 33.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56190.1 GT:GENE BAD56190.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1506569..1508143 GB:FROM 1506569 GB:TO 1508143 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56190.1 LENGTH 524 SQ:AASEQ MVWDAWGDPAGRQPLSDQIRGLLKQVFGVSGEAVARRDEGDVPLRPSALTPHQRDGLAAVVGADAISTDHRDRLRHAGGKSTLDLLRRRADEPQDAPDAVVFPADHDEVLAVLAHCAEHGIAVVPFGGGTSVVGGVDPVRGRFPVVVALDLRRLDALLDVDPVSGTATFGAGVTGPRAEELLAAHGLSLGHFPQSFEFASIGGFAATRSSGQASAGYGRFDDMVQRLRIATPSGPLELGRAPASAAGPDLRELFLGSEGTLGVITEVTVRVHPRPDSVVYRAWSFPDFATGAAALRAVVQAGAAPTVLRLSDEAETGLNLARSRDVGGEPVQGCLAVTTFEGSAAHTAARSAEADAVLRAAGGRDLGPDPAAQWEHGRFAAPYLRDSLLDVGVLCETLETATTWSNIAALKTAVTAALTDSLAGQGTPPLVMCHISHTYPTGASLYFTVVAKQLDDPIAQWQAAKTAAGEAIVATGGTITHHHAVGTDHRPWLPDEIGELGVRVLAAVKRELDPAGILNPGKLI GT:EXON 1|1-524:0| BL:SWS:NREP 1 BL:SWS:REP 3->524|ADAS_DICDI|2e-72|33.3|520/611| SEG 144->163|pvvvaldlrrldalldvdpv| SEG 289->304|atgaaalravvqagaa| SEG 344->356|aahtaarsaeada| SEG 408->419|aalktavtaalt| BL:PDB:NREP 1 BL:PDB:REP 3->523|2uuuB|2e-63|34.3|492/540| RP:PDB:NREP 1 RP:PDB:REP 43->524|1e8gA|5e-38|12.1|479/550| RP:PFM:NREP 2 RP:PFM:REP 98->236|PF01565|1e-05|36.6|134/139|FAD_binding_4| RP:PFM:REP 456->522|PF02913|8e-08|35.8|67/242|FAD-oxidase_C| HM:PFM:NREP 2 HM:PFM:REP 275->523|PF02913|1.9e-53|33.2|238/249|FAD-oxidase_C| HM:PFM:REP 97->234|PF01565|2.7e-37|41.7|132/138|FAD_binding_4| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01565|IPR006094| GO:PFM GO:0050660|"GO:FAD binding"|PF01565|IPR006094| GO:PFM GO:0003824|"GO:catalytic activity"|PF02913|IPR004113| GO:PFM GO:0050660|"GO:FAD binding"|PF02913|IPR004113| RP:SCP:NREP 2 RP:SCP:REP 57->275|1ahuA2|1e-25|15.6|218/268|d.145.1.1| RP:SCP:REP 305->524|1f0xA1|2e-13|13.5|193/237|d.58.32.2| HM:SCP:REP 50->275|1f0xA2|2.5e-52|40.2|214/0|d.145.1.1|1/1|FAD-binding domain| HM:SCP:REP 248->304|1f0xA1|0.00029|26.3|57/0|d.58.32.2|1/2|FAD-linked oxidases, C-terminal domain| HM:SCP:REP 278->524|1e8gA1|1e-40|25.9|232/0|d.58.32.1|1/1|FAD-linked oxidases, C-terminal domain| OP:NHOMO 1198 OP:NHOMOORG 601 OP:PATTERN 11-----2112111211-11-113-------1-----------------3-------1--1---3--- ---23-------1-33333-32225553444332222763-3331111----1211----333-245121------------111111------------------------------------------------34411---1-1122--111-----11-12112222------------11233---11122222222222222243111122223313--------2------------------------111-----11--11------------------------------------------------------2--1-----1-1-1-----1112--1-1--2-11111---42-----1-121-111------25332134254422222222225---21-3-3233-422233443333431-11-11-111112222222212221223-------------------------------23-1222224446443333355443333226433254-12223343342633511221--12-------112223-31211-11-1--1-21211221222223412----1111-11-1-------111-122----2-------------1---------11---1-11------1------21-2222222-122222222212222222--1----------------------1--1------------------------111-----1312----------------------1211-11111411112121111------------------------11--------1111-11-11--11--------1-1--------------------------11---2----1- ----332-631-231122-211111111111-1---1111-111----112323111112222231211311111211222444131--212212-3232111211-1237221331111222242131282-114121131141111212112212-4353333211243344121219122113--411-2166531 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 522 STR:RPRED 99.6 SQ:SECSTR ##ccccccTTcccccHHHHTTccTTccccccccHHHHHHHHHTTccHHHHHHHHHHHHHHHcGGGEEEcccccccccccccccccccccTTcccccccEEEccccHHHHHHHHHHHHHHTccEEEEcccccTTTTTTccccTTTcEEEEcTTTcccEEEEETTTTEEEEcTTccHHHHHHHHHHTTcTTTEEccccccTTccHHHHHHTTcccccTTccTGGGEEEEEEEETTcEEEcGGGGTcccccccccGGGGcccccEEEEEEEEEcEEccccEEEEEEEEccTTHHHHHHHHHHHHHHTTcccccccccccccHHHHHHHHHHHTcccEEEEEEEEccHHHHHHHHHHHHHHHTTcTTcEEGGccTTcHHHHHHHHTTTccccGGGGGGGGcTTEEEEEEEEcccHHHHHHHHHHHHHHHHHHTccccEEEEEccccEEEEEEEEETTcHHHHHHHHHHHHHHHHHHHHTTcccccccGGGHHHHHHHTcHHHHHHHHHHHHHHHHHcTTccccTTGGG DISOP:02AL 524-525| PSIPRED ccccccccccccccccccHHHHHHHHHcccHHHcccccHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEEccccccEEEEEccccEEEEEccccHHHHHHHHHHcccEEccccccccccEEccccccccccccccccccHHHEEEEEEEEcccccEEEcccccccccccHHHHHHcccccEEEEEEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccc //