[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56203.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  25/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.6.1
:248 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->110 1q06B PDBj 1e-06 32.6 %
:BLT:PDB   127->202 3gp4B PDBj 2e-04 27.6 %
:RPS:PDB   2->107 3d70A PDBj 3e-10 18.0 %
:RPS:PDB   126->214 3d70A PDBj 6e-16 22.5 %
:RPS:SCOP  2->110 1exiA1  a.6.1.3 * 9e-09 16.7 %
:RPS:SCOP  126->224 1jbgA  a.6.1.3 * 1e-12 15.3 %
:HMM:SCOP  3->111 1jbgA_ a.6.1.3 * 8.8e-12 26.7 %
:HMM:SCOP  124->234 1jbgA_ a.6.1.3 * 1.5e-15 29.2 %
:HMM:PFM   7->42 PF00376 * MerR 4.9e-13 38.9 36/38  
:HMM:PFM   126->163 PF00376 * MerR 1.1e-12 47.4 38/38  
:BLT:SWISS 7->110 CUER_SALTY 1e-05 29.0 %
:BLT:SWISS 127->187 ZNTR_ECOLI 1e-05 36.1 %
:PROS 128->150|PS00552|HTH_MERR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56203.1 GT:GENE BAD56203.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1524148..1524894) GB:FROM 1524148 GB:TO 1524894 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56203.1 LENGTH 248 SQ:AASEQ MKYLRPADLARRHGLSTQAVRNYEAEGFLPAAGRTPSGYRMFTEVHGAALSAFLALVTGYGHATAGRIMNALNAGDLDRALRLIDEGHVRLVEDRRTLDSVRRAVEHLTDTGAEPPRPEPGAAARTIGELAHLLRVTPATLRNWEEAGILSPDRERGTGFRRYGPSDVRDARLAHLLRRGGYPLERIALVVAQVRTAGGTDELADALAQWHGRLLAQGTAMLDAAAKVGEYLRLRSDPGTDTATVGSG GT:EXON 1|1-248:0| BL:SWS:NREP 2 BL:SWS:REP 7->110|CUER_SALTY|1e-05|29.0|93/138| BL:SWS:REP 127->187|ZNTR_ECOLI|1e-05|36.1|61/141| PROS 128->150|PS00552|HTH_MERR_1|PDOC00477| SEG 112->125|gaepprpepgaaar| BL:PDB:NREP 2 BL:PDB:REP 7->110|1q06B|1e-06|32.6|92/126| BL:PDB:REP 127->202|3gp4B|2e-04|27.6|76/130| RP:PDB:NREP 2 RP:PDB:REP 2->107|3d70A|3e-10|18.0|106/276| RP:PDB:REP 126->214|3d70A|6e-16|22.5|89/276| HM:PFM:NREP 2 HM:PFM:REP 7->42|PF00376|4.9e-13|38.9|36/38|MerR| HM:PFM:REP 126->163|PF00376|1.1e-12|47.4|38/38|MerR| RP:SCP:NREP 2 RP:SCP:REP 2->110|1exiA1|9e-09|16.7|109/118|a.6.1.3| RP:SCP:REP 126->224|1jbgA|1e-12|15.3|98/106|a.6.1.3| HM:SCP:REP 3->111|1jbgA_|8.8e-12|26.7|105/106|a.6.1.3|1/2|Putative DNA-binding domain| HM:SCP:REP 124->234|1jbgA_|1.5e-15|29.2|106/106|a.6.1.3|2/2|Putative DNA-binding domain| OP:NHOMO 27 OP:NHOMOORG 25 OP:PATTERN -------------------------------------------------------------------- ----1-------------------------------2111-----1--------------11--1-1111--------------------------------------------------------------------------1----------------------------------------------------------------1---------------------2----------------------------------------------------------------------------------------------1-11111-1-1---------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 201 STR:RPRED 81.0 SQ:SECSTR #ccEEHHHHHHHHTccHHHHHHHHHTTccccEEcTTTccEEEcGGGGGHHHHHHHHHHTccHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH###############EHHHHHHHHTccHHHHHHHHHTTcccccEEcTTccEEEcGGGGGHHHHHHHHHHHTccHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHH############################### DISOP:02AL 114-121, 242-248| PSIPRED cccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc //