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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56208.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  41/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:233 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->184 2genA PDBj 9e-27 43.1 %
:RPS:PDB   4->189 3btiB PDBj 1e-17 16.3 %
:RPS:SCOP  1->71 1z77A1  a.4.1.9 * 9e-18 33.8 %
:RPS:SCOP  83->189 2genA2  a.121.1.1 * 6e-09 35.5 %
:HMM:SCOP  2->73 1vi0A1 a.4.1.9 * 4.1e-15 37.5 %
:HMM:SCOP  74->191 2genA2 a.121.1.1 * 9.3e-25 35.6 %
:RPS:PFM   7->53 PF00440 * TetR_N 9e-06 51.1 %
:HMM:PFM   8->53 PF00440 * TetR_N 5e-19 56.5 46/47  
:HMM:PFM   194->218 PF06832 * BiPBP_C 0.00096 44.0 25/90  
:BLT:SWISS 4->53 ACNR_COREF 1e-09 50.0 %
:PROS 19->49|PS01081|HTH_TETR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56208.1 GT:GENE BAD56208.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1528798..1529499) GB:FROM 1528798 GB:TO 1529499 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56208.1 LENGTH 233 SQ:AASEQ MSIRDRVLTAALACFAEDGYERTTIARIRERSGVSNGALFHHFPSKEAIAGALYVDAMGSVHEEYRRVLARRPATLADGVGGVLERHLSWVEADPVRARFVYAQGRLDWASEPGERLRAMNAEIGAAWREWLAPFVSRGEARDLPMTVVVAVVTGPAHALAQQWLAGQLPGSLLAFHAALTETAVAGLSGDPARGSAPASRPVAGRLRLQLVDADGAVVAEGETTTTLTRPDH GT:EXON 1|1-233:0| BL:SWS:NREP 1 BL:SWS:REP 4->53|ACNR_COREF|1e-09|50.0|50/188| PROS 19->49|PS01081|HTH_TETR_1|PDOC00830| BL:PDB:NREP 1 BL:PDB:REP 4->184|2genA|9e-27|43.1|174/186| RP:PDB:NREP 1 RP:PDB:REP 4->189|3btiB|1e-17|16.3|184/186| RP:PFM:NREP 1 RP:PFM:REP 7->53|PF00440|9e-06|51.1|47/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 8->53|PF00440|5e-19|56.5|46/47|TetR_N| HM:PFM:REP 194->218|PF06832|0.00096|44.0|25/90|BiPBP_C| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 1->71|1z77A1|9e-18|33.8|71/75|a.4.1.9| RP:SCP:REP 83->189|2genA2|6e-09|35.5|107/118|a.121.1.1| HM:SCP:REP 2->73|1vi0A1|4.1e-15|37.5|72/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 74->191|2genA2|9.3e-25|35.6|118/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 46 OP:NHOMOORG 41 OP:PATTERN -------------------------------------------------------------------- --------------2---------1------1-1112-1--22---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------11--------1----------------------------------------------------------------------------------------------------------------------------111-----1111-1--------------------------1-------------------2-11-----------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------111-1-------1111--1-1----1--------------------------------------------------------------------------------------------1-1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 211 STR:RPRED 90.6 SQ:SECSTR cccHHHHHHHHHHHHHHcccccccHHHHHHTTTcccTTTTTTcccHHHHHHHHHHHHHHHHHHHHHTTcTHTcccHHHHHHHHHHHHHHccccTTTHHHHHHHTTcccccTTcTTTHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHTTTTccHHHHHHHHHHHHHHHHHHTTccGGGGHHHcHHHHHHHHHHHcc###################### DISOP:02AL 192-208, 228-233| PSIPRED ccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccEEEccccccc //