[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56210.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  198/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->285 2faoA PDBj 4e-35 33.5 %
:HMM:PFM   152->262 PF01896 * DNA_primase_S 1.1e-11 14.5 110/145  
:BLT:SWISS 17->305 Y963_MYCBO 1e-31 31.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56210.1 GT:GENE BAD56210.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1530555..1531517) GB:FROM 1530555 GB:TO 1531517 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56210.1 LENGTH 320 SQ:AASEQ MASKSSSPAVELDVGPRRVRVTNPDRVYFPETGATKLDLVQYYLSVGDGIVNALRERPCMLHRFPKGLAGDKVHQKRLPAGAPDWVSTVRVYFPRYGRHADELCVRELAEVIWAVQMSTVEFHPWNSRSADTERPDEWRIDLDPMPDCPWSRVQRVAGVVQEVLGELGAVGWPKTSGGKGLHVYVRIAPQWSFTELRRAALAFAKEVERRAPDDVTTTWWRRDRDPKLLFVDYNQNARDHTIAAAYSVRGVPQATVSTPVRWSEIPDVDPRDFTMKTVPARYADLGDLHAGIDDAVFLIDELLEWADRDRIEADPPTDRE GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 17->305|Y963_MYCBO|1e-31|31.8|286/759| BL:PDB:NREP 1 BL:PDB:REP 19->285|2faoA|4e-35|33.5|263/295| HM:PFM:NREP 1 HM:PFM:REP 152->262|PF01896|1.1e-11|14.5|110/145|DNA_primase_S| OP:NHOMO 335 OP:NHOMOORG 199 OP:PATTERN -------------------------------------------------------------------- 113-3---------33333-34--343333334444423321--2412-1--333-----444-114232----------1------------------2-1-1-312-1--------------1------------------------------------------------------------------1-1---------------111111------11--------11---------------------------------------------------------------------------------------------------------1-------1----1--1111-1111122----------1--2-----2111221111111----------1------1--231-12222331322411-----11111------------11-----------------------------------112---1--1111-111----11131111---21221---11--111-1-1-2----1--1-----------111-1--------------111---1--3363-1---------------------------------------------------------------------------------------------------------------------------------------------------------------1-111---1--------------------------------11111-11111112111------------------------2112122----------------------------------------------------------------1- ------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 276 STR:RPRED 86.2 SQ:SECSTR ################cccccccTTcEEEGGGTEEHHHHHHHHHHTHHHHHHHHTTccEEEEEcTTcTTcccEEEcccccccTTcEEccGGGcTTTEEccccEEcccHHHHHHHHHTTEEEEEEccccTTcTTcccEEEEEEEEcTTccHHHHHHHHHHHHHHHHHHTcccEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcTTTEEccccGGGcTTc#EEEEcGGGcTTccEEcTTcccccTTcccccEEcGGGGGGcccccccTTTHHHHHHHHccTTTTTT########################### DISOP:02AL 1-18, 312-320| PSIPRED cccccccccccccccccEEEEEccccEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccEEEEcccccccccccEEEEEccccccccccEEEccHHHHHHHHHccEEEEEcccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEEEcccccEEEEEccccccccccEEEEEEHHHHcccccccccHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHcccccccccccc //