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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56213.1
DDBJ      :             putative helicase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  615/915 : Eukaryota  193/199 : Viruses  1/175   --->[See Alignment]
c.37.1c.61.1
:707 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   62->365 1oyyA PDBj 1e-33 36.1 %
:RPS:PDB   62->224 3dkpA PDBj 2e-08 16.5 %
:RPS:PDB   257->365 2bhrA PDBj 6e-18 7.3 %
:RPS:SCOP  34->217 1oywA2  c.37.1.19 * 8e-31 36.2 %
:RPS:SCOP  244->480 1gkuB2  c.37.1.16 * 3e-14 14.8 %
:HMM:SCOP  46->372 2bmfA2 c.37.1.14 * 3.5e-53 29.8 %
:HMM:SCOP  667->708 1pzmA_ c.61.1.1 * 0.00026 38.1 %
:RPS:PFM   281->350 PF00271 * Helicase_C 1e-09 42.9 %
:HMM:PFM   278->351 PF00271 * Helicase_C 6.8e-18 35.1 74/78  
:HMM:PFM   41->210 PF00270 * DEAD 3.5e-18 20.6 155/167  
:BLT:SWISS 62->350 SGS1_YEAST 2e-37 32.6 %
:PROS 160->169|PS00690|DEAH_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56213.1 GT:GENE BAD56213.1 GT:PRODUCT putative helicase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1532177..1534300) GB:FROM 1532177 GB:TO 1534300 GB:DIRECTION - GB:PRODUCT putative helicase GB:PROTEIN_ID BAD56213.1 LENGTH 707 SQ:AASEQ MGRVTTASGPAAIDLTAPDLRERAEELLRELAGGHARLREDQWTAIEALVVRRQRALVVQRTGWGKSAVYFIAAKLLRRAGRGPTVIVSPLLALMRNQVAAAERAGVVAATINSGNVTEWDEIHDRVAAGEIDVLLVSPERLNNPDFRDQVLPKLAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIADLGSDVPVLATTATANDRVVTDVATQIGTDTLVLRGSLDRESLHLSVVAFDDAVERTAWLAARLRELPGSGIIYTLTVAAAHDLADVLATHGHQVAAYTGQTDPAEREALENALLRNEVKALVATSALGMGFDKPDLGFVVHVGAPSSPIAYYQQVGRAGRGTERAEVVLLPGPEDTRIWAYFASVAFPREHIVRGVLDALDADRPLSTAALEPMVELNRSRLDMVLKVLDVDGAVRRVRGGWVGTGQPWEYDTERYERLAAAREVEQQAMLDYQRTTDCRMNFLRRQLDDPSLGADAPGCGRCDNCTGARPDRSVDAEAVAATRARLDRPGIDLAPRKQWPTGMAKLGVPLSGKITAGAETGRVVGRLTDLGWGQRLRALLDGPDGPVPDTVFDACIAVLREWDWAARPTSVLALESARHPVLTASLAARLAEVGRLRDLGTLATRPDRPPVSAANSAHRVAGLHDSWLIPDLTGVDGPILLVDALTDTGWTFTVAAHALRTAGAAAVLPFALASVT GT:EXON 1|1-707:0| BL:SWS:NREP 1 BL:SWS:REP 62->350|SGS1_YEAST|2e-37|32.6|288/1447| PROS 160->169|PS00690|DEAH_ATP_HELICASE|PDOC00039| SEG 20->32|lreraeellrela| SEG 48->61|alvvrrqralvvqr| SEG 99->110|vaaaeragvvaa| SEG 264->280|tltvaaahdladvlath| SEG 418->436|vldvdgavrrvrggwvgtg| SEG 686->704|aahalrtagaaavlpfala| BL:PDB:NREP 1 BL:PDB:REP 62->365|1oyyA|1e-33|36.1|288/512| RP:PDB:NREP 2 RP:PDB:REP 62->224|3dkpA|2e-08|16.5|158/240| RP:PDB:REP 257->365|2bhrA|6e-18|7.3|109/431| RP:PFM:NREP 1 RP:PFM:REP 281->350|PF00271|1e-09|42.9|70/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 278->351|PF00271|6.8e-18|35.1|74/78|Helicase_C| HM:PFM:REP 41->210|PF00270|3.5e-18|20.6|155/167|DEAD| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 34->217|1oywA2|8e-31|36.2|174/206|c.37.1.19| RP:SCP:REP 244->480|1gkuB2|3e-14|14.8|223/242|c.37.1.16| HM:SCP:REP 46->372|2bmfA2|3.5e-53|29.8|282/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 667->708|1pzmA_|0.00026|38.1|42/183|c.61.1.1|1/1|PRTase-like| OP:NHOMO 1727 OP:NHOMOORG 822 OP:PATTERN 11----1------------------------------------11121-1111-----------1--- 113-2--1221----------1---3------12223111-31331211331222211--2221313222-12221111111------333413222--22323222322---------------1--12111211-111----112222322111111111121122333-1-----1----3-11-----12222222322222222212222222111221122222222322222222222222222222121221111122112221211-111---------------------------------------------11121111111212-111122211-1--11--5221-------1---1-2-51111-----111111--11111---------11-11112111121-1221232222221112111121222121111111111111111------------------------------1112-111111111111111122221111111111211-1111112111212211121211111111111311111211-1-11-21----111-111211111321---------------------1---111221221312221322222222221222222----1-1------11111111442112111-11112111211-1111111111111211111111111111111111211121-111111111111----11111111122112111111111111111----------1112112222211112214---------12222111112222211111111111111--2-222222--------21--------------------------1--11------12 1223333-622133223331222222222222222222-21222223322316633272222221111-12211111-1111111111-25434DH32123312221393E36466A45455549A463Aa8-76934328357635342843B2745643655673535S55B53464b4446665573865445653 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 447 STR:RPRED 63.2 SQ:SECSTR #################################HHHcccccccccccccccccEEEEEEccTTccHHHHTHHHHTHHHTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHccEEEEEHHHHHHHTcccGGGccccEEEcccEEEEETHHHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcEEEccHHHHHHHHHHHHHHHHHHHHHHHHTccccccccccccHHHHTTccccTTTTcccHHHHHHHHHHHHTTcccHHHHHHHHHTTccTTccGGGTcccGGGcccccccccEEEcTTccEEEcccccccGGHccHHHHHTcccEEcccccccccHHHHHHHHHHHHHHHHHHccHHHHHTHHHHHHTTcccHHHHHHHHTTTccTTccGGGTcccGGGccEETTEEcEEEcTTccEEEcccccccG################################################################################################################################################################################################################################### DISOP:02AL 396-407, 640-647| PSIPRED cccEEEcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHcccEEEEEccHHHHcHHHHHHHHHHHHcccEEEEEEcHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHcccccEEEEccccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccEEEEccccccHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEEcc //