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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56215.1
DDBJ      :             putative ribokinase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  481/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
c.72.1
:287 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->243 1rkdA PDBj 1e-40 43.9 %
:RPS:PDB   1->250 2c4eA PDBj 2e-36 17.7 %
:RPS:SCOP  6->244 2fv7A1  c.72.1.1 * 6e-48 38.9 %
:HMM:SCOP  1->286 2afbA1 c.72.1.1 * 1.6e-66 42.4 %
:RPS:PFM   8->243 PF00294 * PfkB 3e-26 46.8 %
:HMM:PFM   6->277 PF00294 * PfkB 7.7e-51 35.8 268/300  
:BLT:SWISS 1->245 RBSK_BACHD 2e-42 47.5 %
:PROS 231->244|PS00584|PFKB_KINASES_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56215.1 GT:GENE BAD56215.1 GT:PRODUCT putative ribokinase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1535800..1536663) GB:FROM 1535800 GB:TO 1536663 GB:DIRECTION - GB:PRODUCT putative ribokinase GB:PROTEIN_ID BAD56215.1 LENGTH 287 SQ:AASEQ MTTPVIAVLGSINMDLVTTTARRPAPGETVLGSGFDTVPGGKGANQAVAARRSGGRVEFLGAVGTDVFAPQLRGALESVGVGTAGLRTVPGPSGVASIVVDESGENSIIVVGGANAAMTALRETDRAMIAAADVLVCQLEIPVPTVAAGLRHARANGTTVLLNPSPAQDLPPQLWADVDVAVVNRGEERQLGAVLDRVPHVVVTLGGAGARYRGPDGAELAVPGVPVEVVDTTGAGDAFTGALAVTWRHGPAAALRWACAAGALATTRLGASASIPERAAIEDLLAR GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 1->245|RBSK_BACHD|2e-42|47.5|240/294| PROS 231->244|PS00584|PFKB_KINASES_2|PDOC00504| SEG 252->274|aaalrwacaagalattrlgasas| BL:PDB:NREP 1 BL:PDB:REP 6->243|1rkdA|1e-40|43.9|237/306| RP:PDB:NREP 1 RP:PDB:REP 1->250|2c4eA|2e-36|17.7|249/299| RP:PFM:NREP 1 RP:PFM:REP 8->243|PF00294|3e-26|46.8|231/295|PfkB| HM:PFM:NREP 1 HM:PFM:REP 6->277|PF00294|7.7e-51|35.8|268/300|PfkB| RP:SCP:NREP 1 RP:SCP:REP 6->244|2fv7A1|6e-48|38.9|239/308|c.72.1.1| HM:SCP:REP 1->286|2afbA1|1.6e-66|42.4|278/0|c.72.1.1|1/1|Ribokinase-like| OP:NHOMO 989 OP:NHOMOORG 686 OP:PATTERN --1121121111111211-1-1-----11-11--2-------------------1111111------- 1-1-121122211111111-11---111111-1111211112-1121--1-1212--1--11321222231111121211--2-------2--1-----1-------1-1--------------------------21112----11121---11-----------31111------------321-----1111111111111111113111121111111111------22211111111111111111122211111311123221111212211111111-1------------------------------------1----1111111111111--111112-111--1----1--11--111-1-1--1111--------312--1-----1111111-112---2--1--14--444432333221--11-1323132311--------11111-11----------------------------------------3333322----22342222125441-1---112--1----1-22----1--11--------------1--1-----1---------1-------11-----------------------------1131---11-1-111111111111121121-------------21111111114124312-121123213413111111232311114434344544453433512211112--233323312323---------------111111112-11111221------1-----11111111-1111-1141----1----1112222221111211112111211111---1----------------1----1---------------------111--31111-- -----11-21-111111111222212211111111111-1111-11111122222212111111111111111111111111111111-1-1111111111111---1411111111111111111-11261-1121--12111-111111111-111111-1113131111121-111-31-1143441231131121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 287 STR:RPRED 100.0 SQ:SECSTR ccEEEEEEEcccEEEEEEEccccccTTcccccccEEEEEEcHHHHHHHHHHHTTcEEEEEcEEcTTTTTcHHHHHHHHTTcccTTcEEccccccEEEEEEcccccEEccEEcGGGGGGGGccccccccEEEEEEccccHHHHHHHHHHHcTTcEEEEccGGGGGGccHHHHHHHHHTccEEEEEHHHHHHHHHHHTTccEEEEEcGGGcEEEEccccEEEEcccccccccccTTHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTccccccccHHHHHHHHHH PSIPRED ccccEEEEEccccEEEEEEcccccccccEEEccEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccEEEEEEcccccEEEEEEccccccccccccccHHHHccccEEEEEccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHcccEEEEcHHHHHHHHHHHccccEEEEEEccccEEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcc //