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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56219.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  75/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.198.3
:199 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->109 2fkiA PDBj 3e-12 36.2 %
:RPS:PDB   1->109 2a1vA PDBj 1e-21 27.1 %
:RPS:SCOP  1->115 2fkiA1  d.198.3.1 * 2e-27 32.1 %
:HMM:SCOP  1->113 2a1vA1 d.198.3.1 * 9.3e-31 46.8 %
:RPS:PFM   11->98 PF04237 * DUF419 1e-12 47.1 %
:HMM:PFM   10->100 PF04237 * DUF419 4e-24 44.3 88/92  
:BLT:SWISS 1->109 YJBR_ECOLI 1e-11 36.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56219.1 GT:GENE BAD56219.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1540350..1540949 GB:FROM 1540350 GB:TO 1540949 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56219.1 LENGTH 199 SQ:AASEQ MDHAELVRYCLAKPGAVADEPWEGDLVAKVGGKIFAFLGTESVGLKCGRDRLEADELVRIHPDEVTPSAYIGRYGWNAVRIDGGISDNELRELIDFSYEEIVRKLPKSKGLERSAGSACLLQDSLSVSLALLTSIRWHGECDAGRRDIDGWGRLVEAGHRGCRAGGVLADGSGCAAGRAVAPRRGGDPARGAGRGAAAR GT:EXON 1|1-199:0| BL:SWS:NREP 1 BL:SWS:REP 1->109|YJBR_ECOLI|1e-11|36.2|105/118| SEG 175->198|aagravaprrggdpargagrgaaa| BL:PDB:NREP 1 BL:PDB:REP 1->109|2fkiA|3e-12|36.2|105/118| RP:PDB:NREP 1 RP:PDB:REP 1->109|2a1vA|1e-21|27.1|107/138| RP:PFM:NREP 1 RP:PFM:REP 11->98|PF04237|1e-12|47.1|85/94|DUF419| HM:PFM:NREP 1 HM:PFM:REP 10->100|PF04237|4e-24|44.3|88/92|DUF419| RP:SCP:NREP 1 RP:SCP:REP 1->115|2fkiA1|2e-27|32.1|112/118|d.198.3.1| HM:SCP:REP 1->113|2a1vA1|9.3e-31|46.8|111/0|d.198.3.1|1/1|YjbR-like| OP:NHOMO 75 OP:NHOMOORG 75 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-----------------------------------------------------11-1-1-----11------1-------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------1111111111-1111111111111111111-11-----11111111111-1-11--111111--11-111111111--------------11----------------------------1------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 108 STR:RPRED 54.3 SQ:SECSTR ccHHHHHHHHTTcTTEEEEccccccEEEEEEEEEEEEEcccEEEEEccHHH#HHHHHHHHcTTTEEEcTTccTTTEEEEEccccccHHHHHHHHHHHHHHHHHHccHHH########################################################################################## DISOP:02AL 182-199| PSIPRED ccHHHHHHHHHHccccEEEEccccEEEEEEccEEEEEEcccccEEEEcccHHHHHHHHHHcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccc //