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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56227.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  103/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.2
:532 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   486->527 2duyA PDBj 3e-05 55.3 %
:RPS:PDB   471->532 2eduA PDBj 8e-14 27.4 %
:RPS:SCOP  471->532 2oceA1  a.60.2.6 * 9e-15 32.3 %
:HMM:SCOP  462->531 2a1jB1 a.60.2.5 * 2.1e-07 28.6 %
:HMM:PFM   473->498 PF00633 * HHH 1.8e-10 57.7 26/30  
:HMM:PFM   377->427 PF10531 * SLBB 2.5e-11 37.3 51/59  
:HMM:PFM   498->532 PF03934 * GspK 4.2e-05 40.0 35/280  
:BLT:SWISS 472->532 COMEA_BACSU 6e-10 39.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56227.1 GT:GENE BAD56227.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1547034..1548632 GB:FROM 1547034 GB:TO 1548632 GB:DIRECTION + GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56227.1 LENGTH 532 SQ:AASEQ MRATPGWLCTARDWSTGALFSLVGAPARRAPRPSVAAMPRHDERERIRRRLGVLTERVGASRAAAIPPGRPAVVAHTGHRSPASTPHRSGRPGRSRAAAPARWDRDDLPDNDLERDAEVPLAGAFGEDEARPGLVDTALRRSDTGDGRSGDGWIGDGRSGDGRVGDGRTGVGRIGDGRSGDGRTGVGRTGVGRSGDGRSGDGRGSVAEAGSALDLGDDTGPPDPDRHGAPARPEVRTSTARASSAARRDAAWGAAQAPADIAADEFAEVDEPEWLREPQAPEPWTRRLVPERFRGARVDPGRRGAVTLVLVGVLAVLVTAFVLTRAQPVTHPVPPLASVRTTTAPPGVPVSGAARTQAAAPGSVPVPETPPATGELVVSVVGLVHRGGLVRLPAGARVADALAAAGGPRDGADLTGLNLAQRVQDGDQILVGAAAPTGDGPRLGSATISAGGAGGAAGTTTGAPVPGTAGKIDLNTATEAQLDALPGVGPVTARAILAWRTANGRFTAVDQLAEVDGIGPARLARLRELVTV GT:EXON 1|1-532:0| BL:SWS:NREP 1 BL:SWS:REP 472->532|COMEA_BACSU|6e-10|39.3|61/205| SEG 25->50|aparraprpsvaamprhdererirrr| SEG 88->110|rsgrpgrsraaaparwdrddlpd| SEG 140->152|rrsdtgdgrsgdg| SEG 154->206|igdgrsgdgrvgdgrtgvgrigdgrsgdgrtgvgrtgvgrsgdgrsgdgrgsv| SEG 213->225|ldlgddtgppdpd| SEG 238->267|starassaarrdaawgaaqapadiaadefa| SEG 301->325|grrgavtlvlvgvlavlvtafvltr| SEG 374->414|gelvvsvvglvhrgglvrlpagarvadalaaaggprdgadl| SEG 444->470|gsatisaggaggaagtttgapvpgtag| BL:PDB:NREP 1 BL:PDB:REP 486->527|2duyA|3e-05|55.3|38/64| RP:PDB:NREP 1 RP:PDB:REP 471->532|2eduA|8e-14|27.4|62/98| HM:PFM:NREP 3 HM:PFM:REP 473->498|PF00633|1.8e-10|57.7|26/30|HHH| HM:PFM:REP 377->427|PF10531|2.5e-11|37.3|51/59|SLBB| HM:PFM:REP 498->532|PF03934|4.2e-05|40.0|35/280|GspK| RP:SCP:NREP 1 RP:SCP:REP 471->532|2oceA1|9e-15|32.3|62/90|a.60.2.6| HM:SCP:REP 462->531|2a1jB1|2.1e-07|28.6|70/0|a.60.2.5|1/1|RuvA domain 2-like| OP:NHOMO 118 OP:NHOMOORG 103 OP:PATTERN -------------------------------------------------------------------- ----1--111111111111-11--111111111111111111111111-11-111-1---111111111111---111--1-1--------------------------------------------------------11--------1---------------------------------------1-11---------------------------------------------------------------------------------------------1--------------------------1----------------------------------1--1--11--1-1--11111--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-113-34424--11-2---------------------------------------------------------1111---------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------------------------------------------------------------------------------------------------1-1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 62 STR:RPRED 11.7 SQ:SECSTR ######################################################################################################################################################################################################################################################################################################################################################################################################################################################################################HHHHHHccHHHHHHcTTccHHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHHHHHHH DISOP:02AL 1-2, 31-40, 68-122, 223-278, 342-375, 437-467| PSIPRED cccccccEEEccccccHHHHHHHcccccccccccEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEccccEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHccccc //