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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56236.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  155/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.3.1
:292 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  137->283 2ebfX3  d.3.1.17 * 1e-13 3.8 %
:RPS:PFM   137->227 PF01609 * Transposase_11 3e-05 38.3 %
:HMM:PFM   97->291 PF01609 * Transposase_11 1.9e-23 26.1 157/207  
:HMM:PFM   60->123 PF11716 * MDMPI_N 0.00021 32.6 43/140  
:BLT:SWISS 7->104 Y4SN_RHISN 5e-09 32.3 %
:BLT:SWISS 145->292 T6501_BRUO2 3e-10 33.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56236.1 GT:GENE BAD56236.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1564631..1565509 GB:FROM 1564631 GB:TO 1565509 GB:DIRECTION + GB:PRODUCT putative transposase GB:PROTEIN_ID BAD56236.1 LENGTH 292 SQ:AASEQ MTARADLSDAQWARLEPLLPTPKRPGRPSRWTRRRLLDGIRWRIRVGCPWRDIPPQYGSWQAIYALFRRWTRAGVWAHVLRQLQAIADAAGQIGWMVSVDSTIMRAHSHAAGARRDGDRQAEPPGGYRNEPADHALGRSRGGWGTKLHLACEHHLRPLSLLLTAGQAGDSPQFAGVLDGIRVPRLGRGRARVRPDRVLADKAYSSAANRTYLRERGIPATIPVPSDQAGHRRNRGRAGGRPPAFDREIYRHRNTIERGINRLKQHRAVATRYEKLATRYLAVIQIAAIDQWL GT:EXON 1|1-292:0| BL:SWS:NREP 2 BL:SWS:REP 7->104|Y4SN_RHISN|5e-09|32.3|93/125| BL:SWS:REP 145->292|T6501_BRUO2|3e-10|33.1|127/130| SEG 24->35|rpgrpsrwtrrr| SEG 110->119|aagarrdgdr| SEG 228->240|aghrrnrgraggr| RP:PFM:NREP 1 RP:PFM:REP 137->227|PF01609|3e-05|38.3|81/192|Transposase_11| HM:PFM:NREP 2 HM:PFM:REP 97->291|PF01609|1.9e-23|26.1|157/207|Transposase_11| HM:PFM:REP 60->123|PF11716|0.00021|32.6|43/140|MDMPI_N| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 137->283|2ebfX3|1e-13|3.8|130/192|d.3.1.17| OP:NHOMO 1151 OP:NHOMOORG 157 OP:PATTERN ----------------------------------------------2---2----------------- ----1--3--4------22-2-----3-343-4---9-A9-245--51---1----M---11--2152CA------------4-------------1-----------2---------------3------------44-------G-1-----X---------C82--1--------------2----------------------------------------------------------------------4-1-------2----------------------------------------------------------------------------------------------------------6---48D------7-C1A5o------AABB4D644G5-5912-29A-K--1--C5-28259-24---1-7-1-----XXXXXXXX211711-1--------------------------------35-----1---8--1-----3-4-----O-B1-1---------3---4---C----------------L191-----------2------------------4-------------------------------2-3------1-----------2-9---------------------4---------------------------------------8------------------1456--6-----------------------353---1------------------------1-211----------4-2-3--1Df----UD----------9-----------21-------3-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 24-25, 108-134, 229-237| PSIPRED ccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEcccccccHHHHHHHHHHHccccccccccccccEEEEccccccHHHHHHHHHHcccEEEEEcccccHHccccccccccccccccHHHcccccHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHc //