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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56237.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  130/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13g.51.1
:410 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   19->203 3dxjF PDBj 8e-07 10.9 %
:RPS:SCOP  21->77 1h3lA  a.177.1.1 * 5e-07 15.8 %
:RPS:SCOP  117->194 1adtA3  g.51.1.1 * 1e-05 18.9 %
:HMM:SCOP  3->77 1h3lA_ a.177.1.1 * 2.1e-11 29.3 %
:HMM:SCOP  106->171 1or7A1 a.4.13.2 * 1.2e-05 24.2 %
:HMM:PFM   20->79 PF04542 * Sigma70_r2 1.8e-09 26.7 60/71  
:HMM:PFM   126->167 PF08281 * Sigma70_r4_2 8.3e-07 21.4 42/54  
:HMM:PFM   360->388 PF07719 * TPR_2 1e-05 20.7 29/34  
:BLT:SWISS 32->361 Y370_RHIME 4e-25 31.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56237.1 GT:GENE BAD56237.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1565536..1566768) GB:FROM 1565536 GB:TO 1566768 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD56237.1 LENGTH 410 SQ:AASEQ MTGADTAAAVAEHTARTSYGRLVAVLAAGCGDLTLAEDTLAEAFEQALRTWPRRGVPANPEGWLLTVARNRQRDEWKSAGYRRSVPLDTEDPPVEGVALLDDLDADAIPDRRLALLFVCAHPAVAAEARTPLMLQTVLGFDSSQVARAFAVSPAAMQQRLVRAKRRIRDARIPFVVPGRGALAERLPPVLEAIYGCHALTWREGTRSLAGEARYLAVTLATLLADEPEAWALAALTTLVAARNSPADTVFRPLDAQDPADWDPRLITEGEDYLRRAERPGAAPGRFQLEAAIHAVHCARLTTGDTDWQALRTLYTALVAVAPTLGSRTAHAAVLGRTDSAEDGLCLLDRLPPERERFQPYHATRADLLARAGRFAEAAAAYDTAATLTDDPAVREFLRARGAAVRGSPRR GT:EXON 1|1-410:0| BL:SWS:NREP 1 BL:SWS:REP 32->361|Y370_RHIME|4e-25|31.3|329/100| SEG 2->17|tgadtaaavaehtart| SEG 98->116|allddldadaipdrrlall| SEG 229->241|awalaalttlvaa| SEG 274->285|rraerpgaapgr| SEG 369->392|aragrfaeaaaaydtaatltddpa| RP:PDB:NREP 1 RP:PDB:REP 19->203|3dxjF|8e-07|10.9|184/349| HM:PFM:NREP 3 HM:PFM:REP 20->79|PF04542|1.8e-09|26.7|60/71|Sigma70_r2| HM:PFM:REP 126->167|PF08281|8.3e-07|21.4|42/54|Sigma70_r4_2| HM:PFM:REP 360->388|PF07719|1e-05|20.7|29/34|TPR_2| RP:SCP:NREP 2 RP:SCP:REP 21->77|1h3lA|5e-07|15.8|57/75|a.177.1.1| RP:SCP:REP 117->194|1adtA3|1e-05|18.9|53/126|g.51.1.1| HM:SCP:REP 3->77|1h3lA_|2.1e-11|29.3|75/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 106->171|1or7A1|1.2e-05|24.2|66/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 225 OP:NHOMOORG 132 OP:PATTERN -------------------------------------------------------------------- -23-A---------211-------12------23335257-212-8------2-11-2--243--13224-------------------------------1----11----------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43133311111----------1---------------1---------------------------------11-----1111111-111111221111-1111--------1-1-----112-----------------------------------------------1-1132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111------------------------------1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 184 STR:RPRED 44.9 SQ:SECSTR ##################HHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHHHHccccccc#HHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHcccHHHHHHHTTTTccTTcHHHH############################################################################################################################################################################################################### DISOP:02AL 1-2, 173-180, 405-410| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccc //