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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56239.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  82/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:321 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  6->73 1jqlB  c.37.1.20 * 5e-11 24.2 %
:RPS:SCOP  202->313 1jqjC1  a.80.1.1 * 2e-11 14.5 %
:HMM:SCOP  3->198 1jr3D2 c.37.1.20 * 4.4e-09 19.8 %
:HMM:SCOP  199->316 1jr3D1 a.80.1.1 * 6.3e-14 28.0 %
:RPS:PFM   10->176 PF06144 * DNA_pol3_delta 3e-13 33.1 %
:HMM:PFM   10->171 PF06144 * DNA_pol3_delta 1.6e-12 21.5 158/172  
:HMM:PFM   202->317 PF12169 * DNA_pol3_gamma3 5.5e-06 24.5 110/143  
:HMM:PFM   148->221 PF10396 * TrmE_N 0.00028 26.0 73/115  
:BLT:SWISS 146->235 MNME_NITHX 2e-04 34.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56239.1 GT:GENE BAD56239.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1567299..1568264 GB:FROM 1567299 GB:TO 1568264 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56239.1 LENGTH 321 SQ:AASEQ MSERPAAVHLVLGEEELLIERAVAAIVGDVRAVAPDPEAVPVDRLRAGDASTAELAELLSPSLFAEDRVIVLESAAEAGKDAVGVITTAAADPPEGVVLVVLHSGGGRAKAMAPALQKAGAVVHNCAKLTKAAERVEFVRAEFRAAGVRVSGEVVQTVLEAVGSDLRELAAACSQLVADTGGKVDVAAVRRYYSGRAEVTGFEVAELAVAGDRGAAVEALRWAIDRGVPHVLLADALADSVHTIARVGSAGRGDPFKLAQQLGMPPWKVKKAQAQARGWTPATIGSALQVVATLNADVKGGAADSGFALELALGRILDLHG GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 146->235|MNME_NITHX|2e-04|34.1|88/457| SEG 96->107|gvvlvvlhsggg| RP:PFM:NREP 1 RP:PFM:REP 10->176|PF06144|3e-13|33.1|163/168|DNA_pol3_delta| HM:PFM:NREP 3 HM:PFM:REP 10->171|PF06144|1.6e-12|21.5|158/172|DNA_pol3_delta| HM:PFM:REP 202->317|PF12169|5.5e-06|24.5|110/143|DNA_pol3_gamma3| HM:PFM:REP 148->221|PF10396|0.00028|26.0|73/115|TrmE_N| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF06144|IPR010372| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF06144|IPR010372| GO:PFM GO:0006260|"GO:DNA replication"|PF06144|IPR010372| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF06144|IPR010372| RP:SCP:NREP 2 RP:SCP:REP 6->73|1jqlB|5e-11|24.2|66/140|c.37.1.20| RP:SCP:REP 202->313|1jqjC1|2e-11|14.5|110/117|a.80.1.1| HM:SCP:REP 3->198|1jr3D2|4.4e-09|19.8|192/211|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 199->316|1jr3D1|6.3e-14|28.0|118/127|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 82 OP:NHOMOORG 82 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-1111111111111111111111111111111111111111111111111111111111----------------------------------------------------------1----------------------------------------------------------------------------------11------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 250-257| PSIPRED cccccccEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc //