[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56247.1
DDBJ      :             putative glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  195/915 : Eukaryota  45/199 : Viruses  0/175   --->[See Alignment]
a.102.1
:657 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   106->648 3cihA PDBj 3e-36 10.4 %
:RPS:SCOP  296->638 2nvpA1  a.102.1.8 * 4e-37 12.4 %
:HMM:SCOP  234->641 2fbaA1 a.102.1.1 * 2.3e-96 34.5 %
:RPS:PFM   306->579 PF00723 * Glyco_hydro_15 9e-10 27.9 %
:HMM:PFM   266->578 PF00723 * Glyco_hydro_15 1.5e-50 27.9 301/448  
:HMM:PFM   597->630 PF00723 * Glyco_hydro_15 3.8e-05 23.5 34/448  
:BLT:SWISS 28->603 YAY3_SCHPO 4e-76 35.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56247.1 GT:GENE BAD56247.1 GT:PRODUCT putative glycosyl hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1576782..1578755) GB:FROM 1576782 GB:TO 1578755 GB:DIRECTION - GB:PRODUCT putative glycosyl hydrolase GB:PROTEIN_ID BAD56247.1 LENGTH 657 SQ:AASEQ MASPHESHDPTASSTPSGYRHRAAYPPIDDYAFLSDCETNCLIAANGSVEWMCLPRPDSPSVFGAMLDRSAGHFRIGPYGRNVPAARRYLPGGMILETTWQTETGWLIVRDALVLGPWHNNDQRSRTHRRTPMDWDAEHMLLRTVKCVNGTVELEMSCQPSFDYHLAGARWEYTGKVYEEATAVRADDPAAGPTLVLTTDLRLGLEGREARARTRMREGDEIFVALTWSELPAPKTFEEAAHKMHRTIECWRQWITLGKFPDHPWRSYLQRSALTLKGLTYAPTGALLAAATTSLPEQPGGQRNWDYRYTWVRDASFALWGLYTLGLDREADDFFAFLNDATTGPNGEPVPLQVLYGIGGERELTERELPHLAGYDGAQPVRIGNGAYNQEQHDIWGTMLDAVYLHVKSRQQVPEALWPLLERQVDAAIAHWREPDRGIWEVRGEPQHFTSSKVMCWVALDRGAKLAELHGQLERASQWAEIAEEIRTDVLVHGVNEEGVFTQTYGGDTLDASLLLVVLVRFLPPDDHRVRATVLAIADRLTENGLVLRYRTETTDDGLTGAEGAFTICSFWLVSALVEIGEVRRARHLCERLLGFASPLRLYAEEIDPRSGRHLGNFPQAFTHLALINAVTHVIRAENEQDAGGFRPAHSPAHHPN GT:EXON 1|1-657:0| BL:SWS:NREP 1 BL:SWS:REP 28->603|YAY3_SCHPO|4e-76|35.9|555/100| SEG 279->295|ltyaptgallaaattsl| SEG 514->520|lllvvlv| RP:PDB:NREP 1 RP:PDB:REP 106->648|3cihA|3e-36|10.4|508/690| RP:PFM:NREP 1 RP:PFM:REP 306->579|PF00723|9e-10|27.9|272/402|Glyco_hydro_15| HM:PFM:NREP 2 HM:PFM:REP 266->578|PF00723|1.5e-50|27.9|301/448|Glyco_hydro_15| HM:PFM:REP 597->630|PF00723|3.8e-05|23.5|34/448|Glyco_hydro_15| GO:PFM:NREP 2 GO:PFM GO:0004339|"GO:glucan 1,4-alpha-glucosidase activity"|PF00723|IPR011613| GO:PFM GO:0005976|"GO:polysaccharide metabolic process"|PF00723|IPR011613| RP:SCP:NREP 1 RP:SCP:REP 296->638|2nvpA1|4e-37|12.4|339/426|a.102.1.8| HM:SCP:REP 234->641|2fbaA1|2.3e-96|34.5|391/0|a.102.1.1|1/1|Six-hairpin glycosidases| OP:NHOMO 386 OP:NHOMOORG 256 OP:PATTERN ------2222222222----------------------------------111--------111---- 1-213--1111---22211-11--1111111111113253154321111211233111--544-1155522-----------2--1-----1-1---------1121-11---------------11---1--1-1---------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11----------1--1-----1-11133111111------------331231331-1--------121-----11------------------111-1---------------------------------111------12112121111122311111111221211--111-1211-1111----1--------------1--------1---------1121-----221233--------------------------------------------------------------211--------1-------------------------------------------------------------------------------------------------1--------------------------------1111-121--212------------------------1133333232--------11--------------------------------------------------11- ----22--------1--11-222111--------------------1111111111111111------------------------11-111-11111111--112---2-------------------------------------------------------------------------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 630 STR:RPRED 95.9 SQ:SECSTR #######################cccccEEEEEEEETTTTEEEEETTEEEEEEEEEETTTTEEEEEEEccTTcEEEcTTccEEEEEEEEETTEEEEEEEETTTccEEEEccEEEEEEEEEEccccccEEEEEcccccccTTcEEEccccccccTTccccccTTcccEcEEcccccTTccGGGcccEEEEcccEEEEcTTccEEEEEEEEEEEEEEEEEEEEEEEEccHHHHHcTTTcccEEEEEEETTEEEETTTTEEEEccccEEEccccEEEEEEEEcTTEEEEEEEEEEEcccccccEEEEccHHHHHHHHHHHHHHHTccccccccccccccccccccccEEEccTTTcEEHHHHHHHHHHHTTTccHHHHHHHHHHHHccccccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccTTccccTTccccccccccEEHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHEETTTEEccEEETTEEcccccHHHHHHHHHHTTcccHHHHHHHHHHTTTcTcccccTTcTTcTTcTTccccccHHHHHHHHHHHHTTcHHHHHHHHHHHHHHTTTcccccccccTTccGGGGGcTTcTTccccccGGGcTHHHHHHHHTccEEEEEcTT#### DISOP:02AL 1-24, 641-657| PSIPRED cccccccccccccccccccccccccccHHHHEEEEcccEEEEEEccccEEEEEccccccHHHHHHHHcccccEEEEEEcccccEEEEEEEcccEEEEEEEEccccEEEEEEEEEcccccccccEEEEEEccccccccccEEEEEEEEEcccEEEEEEEEEcccccccccEEEEcccccccccccccccccccccEEEEEcccccccccccEEEEEEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHcccccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc //