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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56266.1
DDBJ      :             putative oxygen-independent coproporphyrinogen III oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  834/915 : Eukaryota  71/199 : Viruses  0/175   --->[See Alignment]
c.1.28
:424 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->360 1oltA PDBj 7e-14 24.5 %
:RPS:PDB   32->220 2cb6A PDBj 2e-12 9.7 %
:RPS:PDB   205->295 3brcB PDBj 7e-07 9.9 %
:RPS:SCOP  39->418 1oltA  c.1.28.2 * 1e-64 22.1 %
:HMM:SCOP  46->426 1oltA_ c.1.28.2 * 4e-114 41.4 %
:RPS:PFM   145->220 PF04055 * Radical_SAM 1e-06 34.7 %
:RPS:PFM   306->412 PF06969 * HemN_C 1e-15 43.0 %
:HMM:PFM   306->413 PF06969 * HemN_C 3.9e-31 47.2 108/118  
:HMM:PFM   52->231 PF04055 * Radical_SAM 2.4e-21 28.4 162/166  
:BLT:SWISS 45->423 HEMN_MYCTU e-105 63.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56266.1 GT:GENE BAD56266.1 GT:PRODUCT putative oxygen-independent coproporphyrinogen III oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1599746..1601020 GB:FROM 1599746 GB:TO 1601020 GB:DIRECTION + GB:PRODUCT putative oxygen-independent coproporphyrinogen III oxidase GB:PROTEIN_ID BAD56266.1 LENGTH 424 SQ:AASEQ MTAFTGVRPRAGPMRGAGHTGGVSPVAASPTQPDADAPALRDFGGGPFGIYVHVPFCATRCGYCDFNTYTAGELGTSASPQSWLAALRGELATAAAQFARLPSPVPPVATVFVGGGTPSLLGGEGLAEVLDAVRANFTVAADAEITTESNPESTSPRFFERLREAGYTRISLGMQSAAQHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGETDADLDATLDAVLAAGVDHVSAYSLIVEDGTALARRVRRGELPAPDEDVLAARYERIDRRLTAAGLAWYEVSNWAATESARCRHNLGYWDGGDWLGAGPGAHSHLGGVRWWNVKHPARYAERVARGGLPAAGWEALTDDERYLERVMLTVRLRTGLPLADLAPAAAPALDRVVADGLATRTPTHLVLTDRGRLLADAVVRRLVE GT:EXON 1|1-424:0| BL:SWS:NREP 1 BL:SWS:REP 45->423|HEMN_MYCTU|e-105|63.7|372/375| SEG 84->96|laalrgelataaa| SEG 114->126|gggtpsllggegl| SEG 193->204|ravaaarearaa| SEG 221->238|tdadldatldavlaagvd| SEG 376->390|lpladlapaaapald| BL:PDB:NREP 1 BL:PDB:REP 47->360|1oltA|7e-14|24.5|302/434| RP:PDB:NREP 2 RP:PDB:REP 32->220|2cb6A|2e-12|9.7|175/238| RP:PDB:REP 205->295|3brcB|7e-07|9.9|91/149| RP:PFM:NREP 2 RP:PFM:REP 145->220|PF04055|1e-06|34.7|75/164|Radical_SAM| RP:PFM:REP 306->412|PF06969|1e-15|43.0|107/117|HemN_C| HM:PFM:NREP 2 HM:PFM:REP 306->413|PF06969|3.9e-31|47.2|108/118|HemN_C| HM:PFM:REP 52->231|PF04055|2.4e-21|28.4|162/166|Radical_SAM| GO:PFM:NREP 6 GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| GO:PFM GO:0004109|"GO:coproporphyrinogen oxidase activity"|PF06969|IPR010723| GO:PFM GO:0005737|"GO:cytoplasm"|PF06969|IPR010723| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF06969|IPR010723| GO:PFM GO:0055114|"GO:oxidation reduction"|PF06969|IPR010723| RP:SCP:NREP 1 RP:SCP:REP 39->418|1oltA|1e-64|22.1|371/436|c.1.28.2| HM:SCP:REP 46->426|1oltA_|4e-114|41.4|372/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 1125 OP:NHOMOORG 905 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11--1111111111111111111111111111111111--1111112111111111111111-11111111111111--11111111211111111111111111111111111212111111111111122111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111---11---------111-----1111111111111111111111111111111111111111111111112111222222212111111111111211111-111111111111111112-2111111111112111112422111111111111-1111112121111112111211112111121111111111111111111111121-----------111111111-1111-----1111111111222222133331122333332212111211222112111111112211111111111111111221111111111111111111111111111121211111111111111111111111111112122111211112222111222212112111-112311-111122112222333233322-3222333232333222222222221112222222222222222122222221-122222222222--11111111111111111112211111121121111111111211121111111111111111111111112222111112222211111111111111-111111111--------1-1-----------1------1---1111111111111121 ----111-----1-1----------------------------------------------------------------------------------------11--12-212111--1111111-111191-1111-1-11111-111-11-11-112----111-------211-1-C111111113-11111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 81.4 SQ:SECSTR ########################EETTEEEccccTTcEEETTTcccEEEEEcccHHHHHHHcccccccccTTccTTccHHHHccHHHHHHHcccccEEEEEEcEEcTTccEEcccEEGGGGccEEEEEEEcccccEEHHHHccTTcTTccEEEEETccEEEETTEEEEEEEcTTcccGGGGGGccccTTccEEEccTTcTTTTccccccGGGcGGGEEcHHHHHHHHHHHHHHccEEEEEEEEcccccHHHHHHTTcccTTTTTcccccHHHHHHHHHHHHTTTccccHHHHHHHHHHHHcHHHHHHcTTHHHHHHTTTccEEccccccTcTTTTccTTcHHHHHHHHHHTTcEEccccccccccccc####################################################### DISOP:02AL 424-425| PSIPRED cccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHccccEEEEEcccccHHHHHHHcccccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccEEEEcccccEEEccEEEEEcccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEccEEEEcHHHHHHHHHHHHHHHc //