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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56270.1
DDBJ      :             putative transcriptional repressor
Swiss-Prot:HRCA_NOCFA   RecName: Full=Heat-inducible transcription repressor hrcA;

Homologs  Archaea  0/68 : Bacteria  549/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->161 1stzB PDBj 1e-19 36.5 %
:RPS:PDB   9->76 1biaA PDBj 2e-07 18.0 %
:RPS:SCOP  14->80 1hqcA1  a.4.5.11 * 1e-15 27.9 %
:RPS:SCOP  120->344 1stzA2  d.110.2.3 * 7e-22 12.2 %
:HMM:SCOP  7->93 1stzA1 a.4.5.51 * 4e-24 37.9 %
:HMM:SCOP  77->348 1stzA2 d.110.2.3 * 1.9e-55 39.8 %
:RPS:PFM   10->82 PF03444 * DUF293 2e-14 58.6 %
:RPS:PFM   120->326 PF01628 * HrcA 2e-08 26.2 %
:HMM:PFM   108->330 PF01628 * HrcA 1.9e-62 40.5 220/224  
:HMM:PFM   33->65 PF08220 * HTH_DeoR 8.7e-07 51.6 31/57  
:BLT:SWISS 1->347 HRCA_NOCFA e-129 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56270.1 GT:GENE BAD56270.1 GT:PRODUCT putative transcriptional repressor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1602399..1603442 GB:FROM 1602399 GB:TO 1603442 GB:DIRECTION + GB:PRODUCT putative transcriptional repressor GB:PROTEIN_ID BAD56270.1 LENGTH 347 SQ:AASEQ MGPMSSSTEDRRFEVLRAIVADYVATKEPIGSKTLVERHNLGVSSATVRNDMAVLEAEGYITQPHTSSGRIPTDKGYRQFVDRISEVKPLSAAERRAILQFLESGVDLDDVLRRGVRLLAQLTRQVAVVQYPTVSASTVRHIEVVALNPARLLLVVITDTGRVDQRIVELGAVVDDDDLSALRALLGAAMDGKRLAAASAAVAELPESAPQQLRDVLIRVSTVLVETLVEHPEERLVLGGTANLTRNAADFGLPGSLRQVLEALEEQVVVLKLLAAAQQPGTVTVRIGEETQVEEMRSASVVTTGYGVSGSVLGGMGVLGPTRMDYPGTIASVATVARYIGEVLAER GT:EXON 1|1-347:0| SW:ID HRCA_NOCFA SW:DE RecName: Full=Heat-inducible transcription repressor hrcA; SW:GN Name=hrcA; OrderedLocusNames=NFA_14250; SW:KW Complete proteome; Repressor; Stress response; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->347|HRCA_NOCFA|e-129|100.0|347/347| GO:SWS:NREP 3 GO:SWS GO:0006950|"GO:response to stress"|Stress response| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| SEG 105->119|gvdlddvlrrgvrll| SEG 170->189|lgavvddddlsalrallgaa| SEG 195->210|laaasaavaelpesap| SEG 259->279|qvlealeeqvvvlkllaaaqq| SEG 301->320|vvttgygvsgsvlggmgvlg| BL:PDB:NREP 1 BL:PDB:REP 10->161|1stzB|1e-19|36.5|137/311| RP:PDB:NREP 1 RP:PDB:REP 9->76|1biaA|2e-07|18.0|61/292| RP:PFM:NREP 2 RP:PFM:REP 10->82|PF03444|2e-14|58.6|70/76|DUF293| RP:PFM:REP 120->326|PF01628|2e-08|26.2|206/224|HrcA| HM:PFM:NREP 2 HM:PFM:REP 108->330|PF01628|1.9e-62|40.5|220/224|HrcA| HM:PFM:REP 33->65|PF08220|8.7e-07|51.6|31/57|HTH_DeoR| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF03444|IPR005104| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF03444|IPR005104| GO:PFM GO:0003677|"GO:DNA binding"|PF01628|IPR002571| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01628|IPR002571| RP:SCP:NREP 2 RP:SCP:REP 14->80|1hqcA1|1e-15|27.9|61/76|a.4.5.11| RP:SCP:REP 120->344|1stzA2|7e-22|12.2|205/236|d.110.2.3| HM:SCP:REP 7->93|1stzA1|4e-24|37.9|87/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 77->348|1stzA2|1.9e-55|39.8|236/236|d.110.2.3|1/1|GAF domain-like| OP:NHOMO 551 OP:NHOMOORG 550 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111-1111111--111111111111111111-1111-------------------------1-1111111111111111111111111111111111111111111111111111111111111-1-----1-------1111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111-111---1---11111111111111-------------111111111-11111111111111111111111111111111111111111111111-1111-1111-1111111111111111111111111111-11111111111-1--11111111111-1111111111111111111111111111------------------------------1111111111111111111111111111111-1111111111111111111111111111111-------111111-----111-1-111-111111111111111-1-----------11-111-1--1-1-11---------------------------------1111--------------------------------------------------------------------------------------------1---------11--------------------------------------------------------1--------------11111111111111----111111----------111111--111111---1111--1111111111111--- -----------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 45.0 SQ:SECSTR #####ccccHHHHHHHHHHHHTccTTcccccHHHHHHHcHHTccHHHHHHHHHHHHHTTcccEEETTTEEEcccccHHHHHHHHHHHHHHHHHHHHHHHTTccTcccHHHHHHHHHHHHHHHHTcEEEEEcccTTcccccEEEEEEccccEEEEEEEETTE########################################################################################################################################################################################## DISOP:02AL 1-12, 90-102, 276-281| PSIPRED cccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccEEEEEcccccccEEEEEEEEEEcccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHcccHHccHHHHHHHHHHHHcHHHHHHHHHHccccccEEEEEccccccccccccEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccc //