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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56275.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  268/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:405 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  27->173 1pw4A  f.38.1.1 * 1e-07 10.9 %
:HMM:SCOP  1->403 1pw4A_ f.38.1.1 * 3.5e-55 31.7 %
:RPS:PFM   41->173 PF07690 * MFS_1 6e-07 28.6 %
:HMM:PFM   23->269 PF07690 * MFS_1 1e-26 25.1 247/353  
:HMM:PFM   258->397 PF07690 * MFS_1 1.1e-10 27.9 140/353  
:BLT:SWISS 27->319 YNFM_ECOLI 5e-30 28.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56275.1 GT:GENE BAD56275.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1606619..1607836) GB:FROM 1606619 GB:TO 1607836 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56275.1 LENGTH 405 SQ:AASEQ MTTTTMAAPVRDRARERRIARALFAAGLTTFASMYSAQALLPSLSVAFGATPAHAALAVSLTTGFLALAIIPVSALSGRFGRTRVMIGSATATAVIGLLLPLSPSLDVLLAGRAVQGIALAGVPAVAMAYLAEEIDGAGLGAAMGIYVAGTSIGGLAGRLLPSVVLDVASWRWAAAAVGAGAALGTLAFVRLLPPARTSVARTAGWRTVRRDLAAQVRNPALLALFGLAAVLMGGFVSLYNFLGYRLTEAPFALPAAAAGAVFLLYLAGTATSALAGRLADRFGGRRVLAVAFAMMAAGLAATVPDRLVGVIAGMLLYTAGFFAAHAVAGAMVGTLAVGDRGAAASLYLFAYYLGGAVVGGATGLAYAEYGWAGTACAVGALLVLGTGLLAVLPGRGERTPERPG GT:EXON 1|1-405:0| BL:SWS:NREP 1 BL:SWS:REP 27->319|YNFM_ECOLI|5e-30|28.0|293/417| TM:NTM 12 TM:REGION 37->59| TM:REGION 61->82| TM:REGION 86->108| TM:REGION 111->133| TM:REGION 143->165| TM:REGION 174->196| TM:REGION 219->241| TM:REGION 251->273| TM:REGION 288->310| TM:REGION 314->336| TM:REGION 343->365| TM:REGION 374->395| SEG 7->26|aapvrdrarerriaralfaa| SEG 98->110|lllplspsldvll| SEG 174->188|aaaavgagaalgtla| SEG 221->235|allalfglaavlmgg| SEG 250->269|apfalpaaaagavfllylag| SEG 288->302|vlavafammaaglaa| SEG 320->334|agffaahavagamvg| SEG 342->368|gaaaslylfayylggavvggatglaya| SEG 373->395|agtacavgallvlgtgllavlpg| RP:PFM:NREP 1 RP:PFM:REP 41->173|PF07690|6e-07|28.6|133/347|MFS_1| HM:PFM:NREP 2 HM:PFM:REP 23->269|PF07690|1e-26|25.1|247/353|MFS_1| HM:PFM:REP 258->397|PF07690|1.1e-10|27.9|140/353|MFS_1| GO:PFM:NREP 1 GO:PFM GO:0055085|"GO:transmembrane transport"|PF07690|IPR011701| RP:SCP:NREP 1 RP:SCP:REP 27->173|1pw4A|1e-07|10.9|147/434|f.38.1.1| HM:SCP:REP 1->403|1pw4A_|3.5e-55|31.7|401/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 284 OP:NHOMOORG 269 OP:PATTERN -------------------------------------------------------------------- -1---1-1111111211--------1----------111--------1----1111-1------112111-----------------------------------1------------------------------111--------------------------------------------1-1-----1-2-----------------11-1---1-11---------11-------------------1----------------------------------1---------------------------------------1-----------------------1---------------------------------111----1------111--1-111-11111111----1---11-111-----------------11111111111---------------------------------------111---111221111111111111111-11------111--------1---------11----------11-----1----------1-11----111-1-----------------------------1111----1-1-1------11---111111------1-111---11111-111111111111-11111111111111111111111111121112122222121121--1---11-111-111-1111---------------11----------------11111111111-11111112-11111111-----------11-11111111--1111111111--------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 3-16, 198-208, 394-405| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc //