[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56276.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  695/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->224 3fzvB PDBj 7e-16 28.8 %
:RPS:PDB   4->223 1b9nB PDBj 2e-23 6.1 %
:RPS:SCOP  4->102 1b9mA1  a.4.5.8 * 2e-17 9.1 %
:RPS:SCOP  87->293 1i69A  c.94.1.1 * 2e-22 16.9 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 7.5e-23 36.2 %
:HMM:SCOP  86->293 1uthA_ c.94.1.1 * 1e-39 32.4 %
:RPS:PFM   6->61 PF00126 * HTH_1 4e-08 50.0 %
:RPS:PFM   91->224 PF03466 * LysR_substrate 3e-12 32.8 %
:HMM:PFM   88->292 PF03466 * LysR_substrate 3.3e-47 31.7 205/209  
:HMM:PFM   5->62 PF00126 * HTH_1 3.3e-22 50.0 58/60  
:BLT:SWISS 4->226 YYBE_BACSU 8e-37 34.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56276.1 GT:GENE BAD56276.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1607936..1608853 GB:FROM 1607936 GB:TO 1608853 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56276.1 LENGTH 305 SQ:AASEQ MLGEDLRWYTTLVETQSVSAAAARLHLAQPTLSRMLARLERRLGVPLFDRHGKRIALNEFGRVYYEHARRAQSELDAARQAVADLADPAEGVVRLSFLHSFGGWLVPQLVAGFRRGAARVSVTLWQGPAATITRRVLDGSADLGIVSPRPGVTGIGWQPLLRQPLMLAVRPEHRLAGRRQVRLAELGDAEFVTMHPGFGMRRLFDDLCAAAGIRPRIAFESSDLITVAGLVGAGLGVALLPLVDQAPTTVAPVRLIPLADTDAAREIGLIWSAAATPADAVRRFRDHAIEWADTRGGLGAAPPRP GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 4->226|YYBE_BACSU|8e-37|34.5|223/292| SEG 227->243|vaglvgaglgvallplv| BL:PDB:NREP 1 BL:PDB:REP 6->224|3fzvB|7e-16|28.8|208/284| RP:PDB:NREP 1 RP:PDB:REP 4->223|1b9nB|2e-23|6.1|214/245| RP:PFM:NREP 2 RP:PFM:REP 6->61|PF00126|4e-08|50.0|56/60|HTH_1| RP:PFM:REP 91->224|PF03466|3e-12|32.8|134/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->292|PF03466|3.3e-47|31.7|205/209|LysR_substrate| HM:PFM:REP 5->62|PF00126|3.3e-22|50.0|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 4->102|1b9mA1|2e-17|9.1|99/122|a.4.5.8| RP:SCP:REP 87->293|1i69A|2e-22|16.9|201/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|7.5e-23|36.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 86->293|1uthA_|1e-39|32.4|207/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 6283 OP:NHOMOORG 705 OP:PATTERN -------------------------------------1---------------1-------------- 4662I21444442295511-13112F11111263439HLM-6473112221-5553-3--443-96VEGC5-222-11-13652111122-1-1------15-1141114---------------1----------45522---314335434343311111135387552111111111111131-----43C7777788936677868298DA8782438231455454LS-111111111111112224411522322323893353132--1---1111-----------------111111--11111---------3-53882222232223-3332111531-1723119B432211632111--131264431111-75HDF449AC8868898869787G-57F56OAJCE3-PDDF9GDOREKKSN64158E55585BD8788888856767462------------------------------17D22NrdRpt*z**vWKNMLqqsoRQRQHS*etjx*r13UQICGMGErJUAqJAG98433F733444245546BE41312121136334-3-253525156459812--2------------------21-187C7A485A2977AB9A937AC999BBA89BA1--4539------HDGB8ICFFFDFDCCGE-FEEFFCCEBEFDFDDEEDCORMAE587GAFBFGGGGDGDGDBEI9C9A9AC4-645455445555--14111113433369GM222526222222332DDDDD8C368Q5YbZaUYTcGhfiXBNMP---------47A9A88888769899BDGGGG7982222--3-22------------1-------------------------------------361 -------------3------------------------------------------------------------------------------------------------------------------------------------------------7----2---------1-1---------1--A-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 99.7 SQ:SECSTR HHHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTTcccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEHEEEGGGcTTccTTcEEEEEEHHHHHHHHHHTccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHHcc# DISOP:02AL 84-86, 291-305| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEcccccccccEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccc //