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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56279.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  870/915 : Eukaryota  96/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.37.1
:453 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->135 2obyA PDBj 3e-04 29.8 %
:BLT:PDB   203->320 3hf7A PDBj 2e-16 34.7 %
:BLT:PDB   342->414 2pliC PDBj 2e-08 40.9 %
:RPS:PDB   155->325 3bp1B PDBj 6e-32 7.6 %
:RPS:PDB   334->415 3dedB PDBj 3e-08 30.6 %
:RPS:SCOP  183->327 2ooxE1  d.37.1.1 * 7e-24 13.1 %
:RPS:SCOP  332->415 2pliA1  d.145.1.4 * 2e-14 32.5 %
:HMM:SCOP  195->257 1nf7A3 d.37.1.1 * 9.5e-11 38.7 %
:HMM:SCOP  259->335 1pvmA2 d.37.1.1 * 6.8e-12 31.2 %
:RPS:PFM   6->183 PF01595 * DUF21 2e-04 23.3 %
:RPS:PFM   337->388 PF03471 * CorC_HlyC 3e-08 51.9 %
:HMM:PFM   6->185 PF01595 * DUF21 6.6e-34 28.9 180/183  
:HMM:PFM   203->254 PF00571 * CBS 3e-09 32.7 49/57  
:HMM:PFM   265->318 PF00571 * CBS 2.7e-10 25.9 54/57  
:HMM:PFM   337->389 PF03471 * CorC_HlyC 2.6e-16 45.3 53/81  
:BLT:SWISS 20->413 Y2387_MYCBO e-137 65.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56279.1 GT:GENE BAD56279.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1610756..1612117 GB:FROM 1610756 GB:TO 1612117 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56279.1 LENGTH 453 SQ:AASEQ MSSPTLILLAVLLVPIGGLFAGIDSALNTISLARLGDMVRADRPGAVRLSQIVADRARYVNLMVLLRISCEIGATVLLAAALMDIWSDTVALLVTAAIMVLVDYVVIGVGPRTLGRQHAYSLALAAAVPLQVIGALLGPISRLLILLGNAITPGKGFRNGPFASEIELREVVEMASERGVVADEERRMIQSVFELGDTAARAVMVPRTEMVWIEADKTAAQALSLAVRSGHSRIPVIGENVDDILGVVYLKDLVPYADRGRQVRVREVMRPAVFMPDSKPLDALLDEMQRRRNHMALLVDEYGGIAGLVTIEDVLEEIVGEIADEYDTDEIAPVEDLGDGSYRVSARLSVEDLGELYGMEIEDEDVDTVGGLLAHELGRVPLPGSKVEAYGLVLRGEGGPDARGRMRVHTVLVRKAEEPPAIVEAAARTNGRRKGNGSQRDVPAETNEDGDTE GT:EXON 1|1-453:0| BL:SWS:NREP 1 BL:SWS:REP 20->413|Y2387_MYCBO|e-137|65.2|394/435| TM:NTM 4 TM:REGION 7->29| TM:REGION 60->82| TM:REGION 90->112| TM:REGION 125->147| SEG 136->148|llgpisrllillg| SEG 416->427|aeeppaiveaaa| BL:PDB:NREP 3 BL:PDB:REP 34->135|2obyA|3e-04|29.8|94/334| BL:PDB:REP 203->320|3hf7A|2e-16|34.7|118/127| BL:PDB:REP 342->414|2pliC|2e-08|40.9|66/80| RP:PDB:NREP 2 RP:PDB:REP 155->325|3bp1B|6e-32|7.6|171/250| RP:PDB:REP 334->415|3dedB|3e-08|30.6|72/83| RP:PFM:NREP 2 RP:PFM:REP 6->183|PF01595|2e-04|23.3|176/184|DUF21| RP:PFM:REP 337->388|PF03471|3e-08|51.9|52/81|CorC_HlyC| HM:PFM:NREP 4 HM:PFM:REP 6->185|PF01595|6.6e-34|28.9|180/183|DUF21| HM:PFM:REP 203->254|PF00571|3e-09|32.7|49/57|CBS| HM:PFM:REP 265->318|PF00571|2.7e-10|25.9|54/57|CBS| HM:PFM:REP 337->389|PF03471|2.6e-16|45.3|53/81|CorC_HlyC| RP:SCP:NREP 2 RP:SCP:REP 183->327|2ooxE1|7e-24|13.1|145/179|d.37.1.1| RP:SCP:REP 332->415|2pliA1|2e-14|32.5|80/84|d.145.1.4| HM:SCP:REP 195->257|1nf7A3|9.5e-11|38.7|62/0|d.37.1.1|1/2|CBS-domain| HM:SCP:REP 259->335|1pvmA2|6.8e-12|31.2|77/78|d.37.1.1|2/2|CBS-domain| OP:NHOMO 2583 OP:NHOMOORG 984 OP:PATTERN ------------------------433333411----------12122---11-------------12 2221413433333322233-34--3233333-54444334253442335343756132--444253458842222222112-2222223333-322---22313342411222222222222223221112221313333311122244233222221111123213233221222221222232311111-344444443444444442-5435445322234333333343222222222222222222231212222222211222221111121111111111111111111111111111111111111111111111-22231112222212123312222-122122-13311-11-------112413333322222233333323333333333333334-223225233332433244444433322323243333222333333332333233422222222222222122222222222222-2222233323333333333333333333323333333422334324334322322253323442222222222333222222432323232222222222333333121111111111112111111111--122554333233424444434744444553424--3422222-22255444555555555554-4555555555455555555555444445555445444555555555555552-55555555455522332222233332323333333333332233333333344325344444444344443444332323323244434444434444333333322222222253111111222222223321111---1---11------1111111111111111113 -----1--211---1--1-1---1-1----------------------111111-----------1-1--1---------------1--2------------1111-12-2535364122213-552416E41425131231332-21-111-52133621--11----1---212--17111-241-5-42212-224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 349 STR:RPRED 77.0 SQ:SECSTR #################################cTTcEEEEEcccc########ccccEEEEEGGGEEEccTTccHHHHTTcHHHHHHHHHHHTTTTcccTTcEEEEETTTcHHHHHHHHHHHHTTcEEEEEEcc###################HHHHHTTTTcccccHHHHHHHHHHHHHHHHTcccEEEEEEGGGGTTcccccccEEccccccccccccccGGGGTTcEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEcHHHHHccccHHHHHHHHHHHHHHTcccEEEEEEEEcccTTEEEEEEEEcccccccccccTcccGGGcccEEEcTTccEEEETTccHHHHHHHHTcccGGcccccHHHHHHHHHcccccTTcEEEETTEEEEETT######ccEEEEEEEEE###################################### DISOP:02AL 36-46, 414-453| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEEEcccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEEEHHHHHHHHcccccccHHHHccccEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEHHHHHHHHHHHHcccccccccHHHEEccccEEEEEccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEccEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccc //