[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56283.1
DDBJ      :             putative acyl-CoA synthetase
Swiss-Prot:             

Homologs  Archaea  31/68 : Bacteria  535/915 : Eukaryota  168/199 : Viruses  0/175   --->[See Alignment]
a.28.1e.23.1
:699 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   68->453 3e53A PDBj 6e-42 35.2 %
:RPS:PDB   17->453 3e53A PDBj 5e-40 26.6 %
:RPS:PDB   439->498 1b8aA PDBj 5e-06 10.7 %
:RPS:PDB   603->679 2afdA PDBj 5e-07 18.2 %
:RPS:SCOP  18->566 1pg3A  e.23.1.1 * 3e-36 15.2 %
:RPS:SCOP  612->675 1af8A  a.28.1.1 * 2e-06 18.8 %
:HMM:SCOP  14->566 1pg4A_ e.23.1.1 * 1.9e-110 31.2 %
:HMM:SCOP  598->692 1nq4A_ a.28.1.1 * 2.3e-11 27.2 %
:RPS:PFM   66->488 PF00501 * AMP-binding 5e-36 38.4 %
:HMM:PFM   47->481 PF00501 * AMP-binding 1.3e-86 29.9 391/418  
:HMM:PFM   618->673 PF00550 * PP-binding 0.00012 26.8 56/67  
:HMM:PFM   505->629 PF05518 * Totivirus_coat 0.00061 22.0 123/759  
:BLT:SWISS 18->559 FAD26_MYCTU 2e-76 34.5 %
:BLT:SWISS 603->679 ERYA2_SACER 7e-04 28.6 %
:PROS 171->182|PS00455|AMP_BINDING
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56283.1 GT:GENE BAD56283.1 GT:PRODUCT putative acyl-CoA synthetase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1617244..1619343 GB:FROM 1617244 GB:TO 1619343 GB:DIRECTION + GB:PRODUCT putative acyl-CoA synthetase GB:PROTEIN_ID BAD56283.1 LENGTH 699 SQ:AASEQ MCCSPNSSECAFDNWNELLRVRASEKSDDIAFVFLDDAGRQAQALDYGDLHRRAEALAARLTRDFKLGDRVLLLHPPGLDYVVSFYACLYAGLVAVPLFPPQRNRVNHVEAVARDCAAAAVVSTPEVLAEMANLSGDLFVSRLPRVSTEYTDDLPGEFEPPKIGGSQIAYLQYTSGSTSAPKGVIIDHAMALQQVRELAFSWEVDATSVVVSWLPHFHDFGQVSSVLMPVYVGGGAVLMAPSTFVKNPFRWLAAVTEYRGTHSGAPNFAFDLCVDKITPAERAELDLASWRLVSNGAEPVRLGTLERFEKTFAPHGLAPTALSPGYGLAEATLKVCSGTPDRRYRTVRLDDAALGRRKIVPSTAEHGSTELVGCGGTVLETEVAIVEPETGRRVGDDELGEIWVSGPIVAPGYWNRPEDSEQTFRARIAGDDSGRTYLRTGDLGFVHEGELFICGRVKNLMIVNGVNYYLEDLEATVVGSDEALRAGAVIAFSVERDGQENLVLVAEYRADTTRAPEELVTVMHTAVSRKHAVAPAAIVLIAAGTIPRTTSGKLRRQQCKADFLAGSLQEIHRWEGMVTITEETTGGAAPAGGGMPSMRELVRQGLATQVSEWITANLGAEAGRVRTSRSLIENGFGSVDQMDLHERLETWSGKRFPPELMWDAPSIDEMVEVIAGFLVPGAAEPAATPTEDPTGVGAQ GT:EXON 1|1-699:0| BL:SWS:NREP 2 BL:SWS:REP 18->559|FAD26_MYCTU|2e-76|34.5|537/583| BL:SWS:REP 603->679|ERYA2_SACER|7e-04|28.6|77/3567| PROS 171->182|PS00455|AMP_BINDING|PDOC00427| TM:NTM 1 TM:REGION 81->103| SEG 50->63|lhrraealaarltr| SEG 109->122|veavardcaaaavv| SEG 532->543|avapaaivliaa| SEG 581->594|teettggaapaggg| SEG 680->695|pgaaepaatptedptg| BL:PDB:NREP 1 BL:PDB:REP 68->453|3e53A|6e-42|35.2|355/416| RP:PDB:NREP 3 RP:PDB:REP 17->453|3e53A|5e-40|26.6|406/416| RP:PDB:REP 439->498|1b8aA|5e-06|10.7|56/438| RP:PDB:REP 603->679|2afdA|5e-07|18.2|77/88| RP:PFM:NREP 1 RP:PFM:REP 66->488|PF00501|5e-36|38.4|372/405|AMP-binding| HM:PFM:NREP 3 HM:PFM:REP 47->481|PF00501|1.3e-86|29.9|391/418|AMP-binding| HM:PFM:REP 618->673|PF00550|0.00012|26.8|56/67|PP-binding| HM:PFM:REP 505->629|PF05518|0.00061|22.0|123/759|Totivirus_coat| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF00501|IPR000873| GO:PFM GO:0008152|"GO:metabolic process"|PF00501|IPR000873| RP:SCP:NREP 2 RP:SCP:REP 18->566|1pg3A|3e-36|15.2|512/634|e.23.1.1| RP:SCP:REP 612->675|1af8A|2e-06|18.8|64/86|a.28.1.1| HM:SCP:REP 14->566|1pg4A_|1.9e-110|31.2|509/643|e.23.1.1|1/1|Acetyl-CoA synthetase-like| HM:SCP:REP 598->692|1nq4A_|2.3e-11|27.2|92/95|a.28.1.1|1/1|ACP-like| OP:NHOMO 2653 OP:NHOMOORG 734 OP:PATTERN 11------11311-2---1111-6-11--1-1-1----1111111112-11-1--------------- -2217121333614EGFGG-GD66NGGGGGGDHEEEAPNO-959---11---21332---234-97B8491---------1-5-------------1----1---3-1---------------------1------43376---C34831226----------3--552C3------------32132--133A6666665576675641366654664853211------61-111111111111111---1-1-1--1--1------------------------11--------------------------------------3----1--1-12-33------1--3--2-1--12---41-------1-34337-----3286721475A6411111111111-32523825333-22231221211246232233--112241111111122111242------------------------------65B41222-45657677555333-9BCCC5C947CGHC-143722542B245871-3----3122-111111211-2J51-1122-3111-43223-12222129822-1---1111-1-1--------1-12---11212-1-223111134211112113125--1-12-------11511111113133222-1212221111112211221111213511-1111111111111121122211--112222211122----2223223321-51211111------1---22222111133233435646442444437222222222--2221111123122-------1111---------------------1--------------------------------------2- --223---21--23474756433A99C65443443357576773435334788C12334555111---11--111------1111111-1--4-41111---3625-2A267C6F553223343782518M5343723333324214223B2223333544716384242B3364---2G-1-127CAOAAA1237234 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 644 STR:RPRED 92.1 SQ:SECSTR #########cccccHHHHHHHHHHHcTTcEEEEEEcccccEEEEEEHHHHHHHHHHHHHHHTTcccTTcEEEEEccccHHHHHHHHHHHHTTcEEEEEcccccTTHHHHHHHHHcccEEEEcHTccEHHcccEEEEcTTTHHHHHTTcccEEEEGGGccTTccccccEEEEEEcccEEEEHHHHHHHHHHHHHHccHHHHcccccTTEEEEEcccTTcHHHHHHTHHHHHHTcTccEEEccHHHHHHHHcTHHHHHHcccEEEEEEcHHHHHHHHHHccTTTTTcccTTccEEEEccccccHHHHHHHHHHHHTTTccGGGEEEEEccGGGccccEEccTTccccEEEEEHHHHHTTcccccccEEEEEcEccccEEcTTcEEEEEETTTTEEccTTccEEEEEEcTTcccccTTcHHHHHHHHcccccTTccccccEEEEEEEEEETTEEEcEEEEcccEEETTEEEEHHHHHHHHHHcTTEEEEEEEEEEEEcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccGGGcccEEEEcccccccTTccccHHHHHHHHHHHHTc##########################cccccccHHHHHHHHHHHHHHHHTccGGGccTTccGGGTTcccTHHHHHHHHHHHHTTccccGGGTTTcccHHHHHHHHHHHTc#################### DISOP:02AL 1-2, 677-692, 697-699| PSIPRED ccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccEEEEHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHHHccccccccccccccHHccccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHcccEEEEcHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHEEccccccccccccccHHHHcccccccccccccccccccccEEccccEEEEEEcccccccccccEEEEEEccccHHccccccHHHHHHHHcccccccccccccEEEccEEEEEccEEEEEEccccEEEEccEEEcHHHHHHHHHHccccHHcEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHcccccccccccccccccccccc //