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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56285.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  797/915 : Eukaryota  186/199 : Viruses  1/175   --->[See Alignment]
c.67.1d.144.1
:873 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   198->304 1cm8A PDBj 3e-05 34.7 %
:BLT:PDB   463->865 3bs8A PDBj 1e-48 33.3 %
:RPS:PDB   93->238 2bt7A PDBj 2e-19 9.0 %
:RPS:PDB   222->295 3bboU PDBj 7e-04 10.8 %
:RPS:PDB   439->867 3dodB PDBj 8e-48 23.5 %
:RPS:SCOP  124->302 1zylA1  d.144.1.6 * 1e-10 12.3 %
:RPS:SCOP  439->866 1d7rA  c.67.1.4 * 2e-49 23.4 %
:HMM:SCOP  105->406 1tqiA2 d.144.1.9 * 4.3e-16 25.8 %
:HMM:SCOP  433->865 1qj5A_ c.67.1.4 * 1.5e-89 34.0 %
:RPS:PFM   95->212 PF03109 * ABC1 2e-17 41.0 %
:RPS:PFM   466->778 PF00202 * Aminotran_3 2e-33 40.3 %
:HMM:PFM   466->782 PF00202 * Aminotran_3 2.5e-50 30.7 303/339  
:HMM:PFM   95->212 PF03109 * ABC1 2.2e-30 40.2 117/119  
:HMM:PFM   193->291 PF00069 * Pkinase 4.7e-06 21.4 98/260  
:BLT:SWISS 44->413 UBIB_LEPCP 2e-43 31.1 %
:BLT:SWISS 461->857 GSA_SYNAS 3e-59 36.8 %
:PROS 666->702|PS00600|AA_TRANSFER_CLASS_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56285.1 GT:GENE BAD56285.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1620413..1623034 GB:FROM 1620413 GB:TO 1623034 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD56285.1 LENGTH 873 SQ:AASEQ MLKHLARAGVLSARGAAEYSLAALRDRDPASRDRRRAEAVLDFLVRMGPIYIKMGQIAATRSDLFGPDWVSTLRVLQDQTPHMTAAQSRRAVERELGRPLTQVFRRFDAEPVASASVAQVHVAELLDGRKVAVKLVKDGVPEQIEESLKSIATLLRLLNRATPRLRELDVATRFDEIARLLRPQADMTHEAAQQRRIHANFAGHPYVTVPAVLDELVTSRMLVMQFMDGIPGKRVEEVGFPRDQLARRLQDVIYTMLYMHGVCHGDPHPGNVMFGPTGELILLDYGVTVELTEDEKWGLSSFYYACTRKEWHNAIDRFTRYFVLADEKLHRNRAAYDAEMAEVLRYHFDISSSQWSTISYFNDVSAVLRKYDSRYTTNFTKVELVFLSCEGFASQIDPDIDIWANARRFTDRYSPYMSAEVEARFAAGFAEQMPTSLRLRDRAQATLVAPTHIDRYFFPSGFPVFVESAAGGRVRDFDGNDYLDLSGGYGPHLLGYGHPAITEAITTGVRRGLVNGIGNPGEIELAEQLVRAFPAADKAVLCNSGTEAILFAIRMARGYRRRATVAKFEGHYHGFSDQGMVSSWFRFSGDRHRPDPVAGSQGVDPATVANTVVMQYGDLDGLARIREHADELACVILEPMPTSVVALNVEFLTALRGLCTELDIPLIFDEVVSGFRVAYGGVQVLADVHPDLTCLGKVIGGGLPCGAVVGRAELIDTAKSSQDPFYDYENKVFAGGTLSGNSLTCAAGLAVLRHLDAHREIYDELESNTQRLAGMLREATAQREIACRINASRSIFSLNFSHRAAGLYRDRMAGSNFKATIALAYYMRKHQVYLPELHSFLISAAHTTEDLDQIAHAFDKSLDEMLADNLFVL GT:EXON 1|1-873:0| BL:SWS:NREP 2 BL:SWS:REP 44->413|UBIB_LEPCP|2e-43|31.1|363/522| BL:SWS:REP 461->857|GSA_SYNAS|3e-59|36.8|383/432| PROS 666->702|PS00600|AA_TRANSFER_CLASS_3|PDOC00519| SEG 22->39|aalrdrdpasrdrrraea| SEG 112->123|vasasvaqvhva| SEG 487->499|ggygphllgyghp| BL:PDB:NREP 2 BL:PDB:REP 198->304|1cm8A|3e-05|34.7|101/327| BL:PDB:REP 463->865|3bs8A|1e-48|33.3|387/430| RP:PDB:NREP 3 RP:PDB:REP 93->238|2bt7A|2e-19|9.0|145/170| RP:PDB:REP 222->295|3bboU|7e-04|10.8|74/122| RP:PDB:REP 439->867|3dodB|8e-48|23.5|396/416| RP:PFM:NREP 2 RP:PFM:REP 95->212|PF03109|2e-17|41.0|117/119|ABC1| RP:PFM:REP 466->778|PF00202|2e-33|40.3|288/336|Aminotran_3| HM:PFM:NREP 3 HM:PFM:REP 466->782|PF00202|2.5e-50|30.7|303/339|Aminotran_3| HM:PFM:REP 95->212|PF03109|2.2e-30|40.2|117/119|ABC1| HM:PFM:REP 193->291|PF00069|4.7e-06|21.4|98/260|Pkinase| GO:PFM:NREP 2 GO:PFM GO:0008483|"GO:transaminase activity"|PF00202|IPR005814| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00202|IPR005814| RP:SCP:NREP 2 RP:SCP:REP 124->302|1zylA1|1e-10|12.3|179/325|d.144.1.6| RP:SCP:REP 439->866|1d7rA|2e-49|23.4|411/431|c.67.1.4| HM:SCP:REP 105->406|1tqiA2|4.3e-16|25.8|190/192|d.144.1.9|1/1|Protein kinase-like (PK-like)| HM:SCP:REP 433->865|1qj5A_|1.5e-89|34.0|406/429|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 4561 OP:NHOMOORG 1048 OP:PATTERN 2211124333333333-411111242243334333221222223233124443221311--2323-45 23344422333222F5555-55338A5555564668677A4365441123334336322263628575A851111111-2334222231111-111---2122425263411111111111111133212323221866861117779A76696644354566776887C745544444444444333--173644444564544554466663444756444333333335625555554555555544444-------2---2222--------1-1----------------------------------1--111----242631111111312426622222131-3213444232732455432223423744611111565782545465411221222223-3353343444327556445573662544245434444352222222232221122112111111111111111111111111111447316444576677A5AAA877BA9AAA6989845443365665553868575534453485444444455534624773431243221156464463422226536211111111111111111124212333555573734567445477455554537564--23434------75652557776766687-777876687776888788667656774565655555655556566547776224455554555551123222224444579664442123----322499978885665466767A6A6677778B9322222222433343333357534556565666622222231663344------------------------------------1111212111123 1111345-943-1232253532365634423332224222-2322223663245-341243443524443243332111243332544-31223445233546565-6I655A57873-2132277291IZ6-758-11141443-412251-A53765--426451235A3233EDDF*HIFGFSEGR4OKGE6455Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 824 STR:RPRED 94.4 SQ:SECSTR #############################################TTccccHHHHHHHHHHHTcccccHHHHHHHHTTcccTTTTTTTHHHHEEETTEEEEcccTTTEEEcccEEEcccccEEEEEEEEEEEEEccccEEEEEEEEEEETTEEEEEEEEEcEEEEcEccEEEEEEEGGGEEcccccGGGGcccHHHHTccEEETTEEEEEEEEEEEEETTEEEEEEEccccccEEEEEcHHHHTTHHHHHHHHHTccccEEEEcccccGGGcccccccTTcEEEEHHHHTTcEEcccccTTccEEcGGGccHHHHHHHHHHHHHHHcGGGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGccTTccHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHH##HccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccTTccHHHHHHHHccccEEEEEcTEEEETTccEEEETTHHHHTcccccccHHHHHHHHHHHTTccccccccHHHHHHHHHHHHHccTTEEEEEEccHHHHHHHHHHHHHHHHHHTEEEEETTccTcTTccEEEEccccEccEEEccccGGGcccccHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEccEEccEEccTTHHHHHHHHHHHTTcEEEEEcTTTTTTTccccGGGGGTccccEEEEcGGGGTTcccEEEEEEHHHHHTTcccGGGccccccccccccTTTTcHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTcTTEEEEEEEEEEETTEEEccEEEEEcccTTTcccccGGGcHHHHHHHTTEEcTTEEEEcccTTccHHHHHHHHHHHHHHHHHHHTcTHT## DISOP:02AL 24-37| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEcccccccEEEcccccEEEEEcccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHcccccccccccccccccccccccccccEEEEccccHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHccccccccEEEEHHHHccccEEEEEEHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccc //