[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56290.1
DDBJ      :             putative initiation factor eIF-2B alpha subunit homolog
Swiss-Prot:             

Homologs  Archaea  65/68 : Bacteria  312/915 : Eukaryota  171/199 : Viruses  0/175   --->[See Alignment]
c.124.1c.74.1
:523 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->325 1t9kC PDBj 2e-47 36.1 %
:BLT:PDB   338->516 2irpB PDBj 5e-14 28.6 %
:RPS:PDB   3->325 2a0uA PDBj 2e-51 34.8 %
:RPS:PDB   331->518 1dzxP PDBj 3e-19 22.9 %
:RPS:SCOP  32->325 1vb5A  c.124.1.5 * 1e-46 23.9 %
:RPS:SCOP  331->518 1jdiA  c.74.1.1 * 9e-27 19.7 %
:HMM:SCOP  1->327 1w2w.1 c.124.1.5 * 9.7e-87 45.6 %
:HMM:SCOP  323->518 1jdiA_ c.74.1.1 * 8.8e-40 35.8 %
:RPS:PFM   71->323 PF01008 * IF-2B 1e-35 44.0 %
:RPS:PFM   341->516 PF00596 * Aldolase_II 1e-10 35.9 %
:HMM:PFM   44->320 PF01008 * IF-2B 2.7e-59 37.8 262/281  
:HMM:PFM   333->516 PF00596 * Aldolase_II 7.9e-46 43.4 166/183  
:BLT:SWISS 4->523 MTNA_NOCFA e-109 49.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56290.1 GT:GENE BAD56290.1 GT:PRODUCT putative initiation factor eIF-2B alpha subunit homolog GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1628420..1629991 GB:FROM 1628420 GB:TO 1629991 GB:DIRECTION + GB:PRODUCT putative initiation factor eIF-2B alpha subunit homolog GB:PROTEIN_ID BAD56290.1 LENGTH 523 SQ:AASEQ MRRSVDWVDGEVHVVDQRALPGEYRIARLGTVEEVVAAIRTLTVRGAPAIGAAGALAVALSARAHGADLAAVRAEAEHIATARPTAVNLAWAVRRVLARLPDGPAAVLAEALALLDEDERVDREMSARAADEVRALCGPGPVRVLTHCNTGRFATVGWGTALGTVRELARRGELDSVLAGETRPLLQGARLTAWELAEAGIPHRICVDSAGPGALAAGAVDCVLVGADRITALGDVANKIGTYPLALAAARAGVPFVVVAPESTVDESLTDPAAIVLEERDPAEVTTFAGVPVTPSGTAAYNPAFDVTPRDLVTAIVTERRTLRPALGFGVPAVAAQLYGRGWLDGTAGNLSVRLDADRAVVTASGRSKGALTAADLITVDLTTGAALDAGARPSAETSIHAALYRAVPGCGAVVHAHPPAATTAATLLAAAGAVVFDDFEIVKGLGPRPAGPFTVPVLTNHAEVPRIAADLAARLTPDAVPAALIDRHGATTWGPDLETARNRMECLEMLCALQLRTGGDRS GT:EXON 1|1-523:0| BL:SWS:NREP 1 BL:SWS:REP 4->523|MTNA_NOCFA|e-109|49.7|519/552| SEG 46->67|gapaigaagalavalsarahga| SEG 105->124|aavlaealalldedervdre| SEG 412->436|gavvhahppaattaatllaaagavv| BL:PDB:NREP 2 BL:PDB:REP 1->325|1t9kC|2e-47|36.1|321/333| BL:PDB:REP 338->516|2irpB|5e-14|28.6|175/204| RP:PDB:NREP 2 RP:PDB:REP 3->325|2a0uA|2e-51|34.8|322/369| RP:PDB:REP 331->518|1dzxP|3e-19|22.9|175/208| RP:PFM:NREP 2 RP:PFM:REP 71->323|PF01008|1e-35|44.0|241/280|IF-2B| RP:PFM:REP 341->516|PF00596|1e-10|35.9|167/181|Aldolase_II| HM:PFM:NREP 2 HM:PFM:REP 44->320|PF01008|2.7e-59|37.8|262/281|IF-2B| HM:PFM:REP 333->516|PF00596|7.9e-46|43.4|166/183|Aldolase_II| GO:PFM:NREP 2 GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01008|IPR000649| GO:PFM GO:0046872|"GO:metal ion binding"|PF00596|IPR001303| RP:SCP:NREP 2 RP:SCP:REP 32->325|1vb5A|1e-46|23.9|264/274|c.124.1.5| RP:SCP:REP 331->518|1jdiA|9e-27|19.7|188/223|c.74.1.1| HM:SCP:REP 1->327|1w2w.1|9.7e-87|45.6|327/403|c.124.1.5|1/1|NagB/RpiA/CoA transferase-like| HM:SCP:REP 323->518|1jdiA_|8.8e-40|35.8|193/223|c.74.1.1|1/1|AraD-like aldolase/epimerase| OP:NHOMO 783 OP:NHOMOORG 548 OP:PATTERN 1121321111111111211111121222--12111221111112222222222123233221121-11 111-1-------------------------------2----1--------------------1-211211----------1--22222-----1--------------1----------------1111111111122122111211121222--1122111221111111-1-----1-------1111-222333333231323332--2222333222--21------22------------------------------------------------------------------------------------------11---1111111-1-1-------111--2--211112111112111111-111---------11111---11111----------1-11111111-12-----------11-----1--11111--2222222222212111---------------------------------------------------------------------------------1----1-111------------111-111-122111221-11111111111111211--------------------1----22----2-----------------------1----1112------1222-12----------------------11------22222-------------------2-------1-2---2--22222-------------222-----1-------1111----------2-22221121111111222------------------------22222222232222--12221122--------1---------------------------1121112111-1- ----222-211-11111111111-11111111111111-1111-111111111111111111111111111111111-1121111122-12111-1111111-111-2-14221212111-21111-21322-22---1111111-11-11--11--1122511111211311211121C111113243131211111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 518 STR:RPRED 99.0 SQ:SECSTR EEccEEEETTEEEEEcTTTTTTcccEEEEccHHHHHHHHHTcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcEEEEEcccccTTTccccccHHHHHHHHHHTTcEEEEEEEccTTTTHHHHTHHHHHHHTTccEEEEcGGGHHHHHHcccccEEEEcccEEcTTccEEEETTHHHHHHHHHHTTccEEEEccGGGccTTcccGGGcccccccTHHHHcccccccccTTcccccccEEEEcGGGccEEEccccEEccGGHHGHHHHHHHHHHTTcccccccEEEEEETTTEEEEccccccGGGccGGGcEEEcTTTccccTTTccccTTHHHHHHHHHHcTTccEEEEEccHHHHHHHHHTccccccccccGGGGGGTccccTcccccEEccccTTcHHHHHHHHHHTTTccccEEEETTTEEEEEEccHHHHHHHHHHHHHHHHHHHHH##### DISOP:02AL 520-523| PSIPRED ccccEEEEccEEEEEEEEEcccEEEEEEEccHHHHHHHHHccEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEcccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHccccEEEEcHHHHHHHHccccccEEEEcccHHHcccccEEHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHcEEccccEEcccccEEEccEEEcccHHHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEcccEEEEEEccccHHHcccccEEEEEcccccEEcccccccHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHcccccccccccHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHccccccEEEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccc //