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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56303.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  171/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:114 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->113 1u2wB PDBj 8e-11 35.2 %
:RPS:PDB   39->103 1bibA PDBj 1e-12 16.9 %
:RPS:SCOP  26->114 1r1uA  a.4.5.5 * 2e-15 33.7 %
:HMM:SCOP  9->115 1u2wA1 a.4.5.5 * 9.2e-24 34.6 %
:RPS:PFM   39->82 PF01022 * HTH_5 2e-07 50.0 %
:HMM:PFM   39->83 PF01022 * HTH_5 3.8e-19 44.4 45/47  
:BLT:SWISS 27->104 Y1325_METJA 5e-11 38.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56303.1 GT:GENE BAD56303.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1639182..1639526) GB:FROM 1639182 GB:TO 1639526 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56303.1 LENGTH 114 SQ:AASEQ MTADTAAAHTPYRSPGPAPVPARSVLEDAGELLRALAAPVRIAIVLQLRESPRCVHELVDALGVTQPLVSQHLRILKSAGVVHGERSGREVLYELVDDHLAHIVVDAVAHAEEG GT:EXON 1|1-114:0| BL:SWS:NREP 1 BL:SWS:REP 27->104|Y1325_METJA|5e-11|38.5|78/89| BL:PDB:NREP 1 BL:PDB:REP 26->113|1u2wB|8e-11|35.2|88/107| RP:PDB:NREP 1 RP:PDB:REP 39->103|1bibA|1e-12|16.9|65/294| RP:PFM:NREP 1 RP:PFM:REP 39->82|PF01022|2e-07|50.0|44/47|HTH_5| HM:PFM:NREP 1 HM:PFM:REP 39->83|PF01022|3.8e-19|44.4|45/47|HTH_5| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01022|IPR001845| GO:PFM GO:0005622|"GO:intracellular"|PF01022|IPR001845| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01022|IPR001845| RP:SCP:NREP 1 RP:SCP:REP 26->114|1r1uA|2e-15|33.7|89/94|a.4.5.5| HM:SCP:REP 9->115|1u2wA1|9.2e-24|34.6|107/0|a.4.5.5|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 239 OP:NHOMOORG 175 OP:PATTERN -----------------------------------11------1--2--------------------- ----1111113---21233-321-1233333121112223----1----1--4-4--11112--213-131-------11111-1-11--------------------1-----------------1-11---------------1-------11--1---------------1-----------------1--111111111111111------1111------------13---------------1--------11---------111--1--------------------------------------------------12-122122221211-111111----1-11-1212---1-223111-11--1--------------------------------2---------1---1-----111--1---------1-------------------11------------------------------------------------------------11--------------211-1----------1------------12-11---3---1-----11--111-1-------1--------------------1---------------------------1------------------------1--------------------------------------------------------------------------------------------1--------------------------------------1------------------------------------2------------1--------------1---------------------------1-112-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 93 STR:RPRED 81.6 SQ:SECSTR ####################cccccEEccHHHHHccccHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETTTEEEcccccccccHHHHHHTccccc# DISOP:02AL 12-25| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccEEEEEEcHHHHHHHHHHHHHHHccc //