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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56317.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  2/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:104 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->76 1sq8A PDBj 1e-05 39.7 %
:RPS:PDB   14->80 2aw6A PDBj 6e-15 13.6 %
:RPS:SCOP  18->78 1utxA  a.35.1.3 * 8e-11 26.2 %
:HMM:SCOP  10->79 2bnmA1 a.35.1.3 * 8.4e-12 34.3 %
:RPS:PFM   23->73 PF01381 * HTH_3 3e-05 41.2 %
:HMM:PFM   20->73 PF01381 * HTH_3 4.4e-14 37.0 54/55  
:BLT:SWISS 18->79 RDGA_PECCC 3e-04 36.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56317.1 GT:GENE BAD56317.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1653635..1653949) GB:FROM 1653635 GB:TO 1653949 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56317.1 LENGTH 104 SQ:AASEQ MTTAHEVGRVPEIKIHHRFRIAREAAGMEQGELAKAIGVSRTSISNAELGKHTPRKIMVNAWAMATGVPVEWLETGRDPHSGGPNGGLESGALPHLDSNQKPAD GT:EXON 1|1-104:0| BL:SWS:NREP 1 BL:SWS:REP 18->79|RDGA_PECCC|3e-04|36.1|61/244| BL:PDB:NREP 1 BL:PDB:REP 18->76|1sq8A|1e-05|39.7|58/64| RP:PDB:NREP 1 RP:PDB:REP 14->80|2aw6A|6e-15|13.6|66/287| RP:PFM:NREP 1 RP:PFM:REP 23->73|PF01381|3e-05|41.2|51/55|HTH_3| HM:PFM:NREP 1 HM:PFM:REP 20->73|PF01381|4.4e-14|37.0|54/55|HTH_3| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 18->78|1utxA|8e-11|26.2|61/66|a.35.1.3| HM:SCP:REP 10->79|2bnmA1|8.4e-12|34.3|70/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 2 OP:NHOMOORG 2 OP:PATTERN -------------------------------------------------------------------- -------------1----------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 81 STR:RPRED 77.9 SQ:SECSTR ccccccHHHHHHHcHHHHHHHHHHHTTccHHHHHTTHTccHHHHHHHHTTcccccHHHHHHHHHHHTccHHHHHHHHTTcc####################### DISOP:02AL 1-7, 77-104| PSIPRED ccccccccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccHHHcccccccccc //