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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56339.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.81.1c.37.1
:417 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   3->89 1b79A PDBj 2e-10 14.9 %
:RPS:PDB   162->330 3dvlC PDBj 1e-07 16.2 %
:RPS:SCOP  3->89 1b79A  a.81.1.1 * 6e-11 14.9 %
:RPS:SCOP  162->293 1ni3A1  c.37.1.8 * 1e-05 11.4 %
:HMM:SCOP  3->98 1jweA_ a.81.1.1 * 4.5e-08 24.7 %
:HMM:SCOP  160->386 1n0wA_ c.37.1.11 * 2.8e-15 25.9 %
:RPS:PFM   3->58 PF00772 * DnaB 4e-05 32.1 %
:HMM:PFM   3->60 PF00772 * DnaB 0.00015 29.3 58/103  
:HMM:PFM   172->197 PF05729 * NACHT 0.00087 42.3 26/166  
:PROS 1->53|PS00430|TONB_DEPENDENT_REC_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56339.1 GT:GENE BAD56339.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1663724..1664977 GB:FROM 1663724 GB:TO 1664977 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56339.1 LENGTH 417 SQ:AASEQ MTLLSPELCRQEFLSVRPEDWYLPSSRNLAVVVAEMLVANRPVDPNTVVVEAQSRGLVPAKVNPSTVFDAVQAGWLPESAPILAQRIRDLSAARKLSEAATRLAQRMEVAWTSGVDRADISAAVTEVRRACDEAEQIAADLSVAPPTPMGEFLAVPDERNWLIPGLLERMERIVLTGAEGGGKTVLCTQLATCMAGGVHPFTGDPLGSGNRGIRVLVVDCENSPAQSRRRFKWMIGQVDAARHKAGLSPVDWSQQMFIDMRPAGIDLLSGTDTAWLERAITETAPDLLVLGPLYKLHHANPNDETAARELVWVLDSLRERHGFALLTEAHAGNANDANGDRMMRPLGSSLFRRWPEFGFGLRRSKSDPGGARASVVDVVSWRGSREERSWPSKLHHSHVLPWMPADPEYYDTLPRSA GT:EXON 1|1-417:0| PROS 1->53|PS00430|TONB_DEPENDENT_REC_1|PDOC00354| SEG 331->340|agnandangd| RP:PDB:NREP 2 RP:PDB:REP 3->89|1b79A|2e-10|14.9|87/102| RP:PDB:REP 162->330|3dvlC|1e-07|16.2|154/486| RP:PFM:NREP 1 RP:PFM:REP 3->58|PF00772|4e-05|32.1|56/103|DnaB| HM:PFM:NREP 2 HM:PFM:REP 3->60|PF00772|0.00015|29.3|58/103|DnaB| HM:PFM:REP 172->197|PF05729|0.00087|42.3|26/166|NACHT| GO:PFM:NREP 3 GO:PFM GO:0003678|"GO:DNA helicase activity"|PF00772|IPR007693| GO:PFM GO:0005524|"GO:ATP binding"|PF00772|IPR007693| GO:PFM GO:0006260|"GO:DNA replication"|PF00772|IPR007693| RP:SCP:NREP 2 RP:SCP:REP 3->89|1b79A|6e-11|14.9|87/102|a.81.1.1| RP:SCP:REP 162->293|1ni3A1|1e-05|11.4|132/296|c.37.1.8| HM:SCP:REP 3->98|1jweA_|4.5e-08|24.7|93/114|a.81.1.1|1/1|N-terminal domain of DnaB helicase| HM:SCP:REP 160->386|1n0wA_|2.8e-15|25.9|197/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ------------------------------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 357 STR:RPRED 85.6 SQ:SECSTR ##HHcGGGHHHHHTTccGGGcccHHHHHHHHHHHHHHHTTccccHHHHHHHHHTTTTHHHHTHHHHHHHHHHHccccccHHHHHHHHHcHHTccccccHHHHHHHHHHHHHHH####ccTTcccHHHHHHHHHHEGGGcGGGcccEEccccccHHHHHHHHHTTTcEETTcEEEEEEcTTccHHHHHHHHHHHHHHTTccccccHHHHHHHcccEEEEEccccHHHHHHHHGGGTccHHHHHHTTcEEEEEccccccccccccccTTHHHHHHHHHHHHHHHHTccEEEEEccHHHHTTTccHHHHHHHHHHHHHHHHHTTcEEEEEEEcEEEcccccccccEEEccTTHHHHHccEEEEEEE###################################################### DISOP:02AL 296-310, 332-344, 363-370, 416-417| PSIPRED cccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHccccHHHHHHHEEEccccccHHHHHHHHHHHHHHcccccccccHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEHHHHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHEEEEEEccccccccHHHHHHHcccccccccccccHHHcccccc //