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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56354.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  210/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
g.72.1
:406 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   97->206 3ee7B PDBj 4e-23 16.5 %
:RPS:SCOP  298->367 1ul4A  g.72.1.1 * 2e-18 12.9 %
:RPS:PFM   1->41 PF12323 * HTH_14 8e-11 63.4 %
:RPS:PFM   71->281 PF01385 * Transposase_2 2e-34 39.7 %
:RPS:PFM   292->362 PF07282 * Transposase_35 2e-15 54.3 %
:HMM:PFM   69->278 PF01385 * Transposase_2 2.6e-50 27.8 205/227  
:HMM:PFM   292->360 PF07282 * Transposase_35 1.5e-27 46.3 67/69  
:HMM:PFM   1->46 PF12323 * HTH_14 9.7e-22 54.3 46/46  
:BLT:SWISS 1->402 YSNA_STRPR 3e-83 48.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56354.1 GT:GENE BAD56354.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1670677..1671897) GB:FROM 1670677 GB:TO 1671897 GB:DIRECTION - GB:PRODUCT putative transposase GB:PROTEIN_ID BAD56354.1 LENGTH 406 SQ:AASEQ MRTAYKVRAYPDTEQAALLRRTFGCVRLVWNKTLAERQQRYTTEQKSTSYKQTDAALSEWKKTEDLAFLSEVSSVPLQQTLRHQHSAFAAFFKGLAKYPRFKNRHGRQSAHFTRSAFRIKDGALWLAKTSAPLRIVWTWPGVDLAALDPTMVIVSREPDGRWFVSFAVDQPDPQPLPVAGESVGVDLGIKDFAVLSTGEKIANPRHMARHERGLRRQQRRLSRMKKGSENRARQRVKVARKHARVRDARRDFLHKTSTELVRRFDTIAVEDLAPKNMVRNRSLAKSISECGWGEFRSMLEYKAEKAGRRVAVINRWYPSSKTCSACGHLLAALSLGTRHWMCPDCGTRHDRDINAAKNILVAAGLAETQNACGGDVRPHGASHRQSPVKQEPSQATAGIPVLQGGE GT:EXON 1|1-406:0| BL:SWS:NREP 1 BL:SWS:REP 1->402|YSNA_STRPR|3e-83|48.9|395/402| SEG 209->223|rherglrrqqrrlsr| SEG 231->251|rarqrvkvarkharvrdarrd| RP:PDB:NREP 1 RP:PDB:REP 97->206|3ee7B|4e-23|16.5|103/115| RP:PFM:NREP 3 RP:PFM:REP 1->41|PF12323|8e-11|63.4|41/46|HTH_14| RP:PFM:REP 71->281|PF01385|2e-34|39.7|204/207|Transposase_2| RP:PFM:REP 292->362|PF07282|2e-15|54.3|70/70|Transposase_35| HM:PFM:NREP 3 HM:PFM:REP 69->278|PF01385|2.6e-50|27.8|205/227|Transposase_2| HM:PFM:REP 292->360|PF07282|1.5e-27|46.3|67/69|Transposase_35| HM:PFM:REP 1->46|PF12323|9.7e-22|54.3|46/46|HTH_14| RP:SCP:NREP 1 RP:SCP:REP 298->367|1ul4A|2e-18|12.9|70/81|g.72.1.1| OP:NHOMO 992 OP:NHOMOORG 233 OP:PATTERN ------1-7114--D--1------2--1323B-1---2----------215F3-----1---12---- ----1------------33-31----33333-1---2-76-19R------------------1---D3213----51----------1--------------------2---------------------------C-12----4-11V4LE*DB11------21Y2AK27-------------28-----1C-22222-2C34431351-----2235111-D3------4----------------1-----6-2--19-H2--5513-2---------------------------------------------------23---------2-4--922-53L34--4--11211A----2-----1--7-----------------------------------------2-2--------------------------------111111112-----------------------------------------------B88-3B-------1-------1----1------------C1----------------------2-------------------------------------------3-2-51----------2-----1----31--------3------------2H-------------3--12221-1-32-22142113132-3111111-------D---1---1---1111121111223------------------------------1-------------64---------1J5----------------------------------------------------1-32----------1115--1-------------------------------54-211-1D-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 103 STR:RPRED 25.4 SQ:SECSTR ################################################################################################EEEEEEEc##cTTTcccEEEEEcccccEEEEEEEccccccEEEEEcTT###cccEEEEEccccEEEEEccTTc#cEEEEEEEcTTccHHHHHHHHHHHHcccc#cccccc######################################################################################################################################################################################################## DISOP:02AL 222-232, 371-399, 403-406| PSIPRED ccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccEEEcccEEEEEEEcEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEEcccccccccccEEEEEEcccEEEEEEcccEEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHccHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccEEEEccccEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEccccEEcccc //