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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56362.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  212/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
g.72.1
:381 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   105->210 3ee7B PDBj 2e-23 12.4 %
:RPS:SCOP  305->354 1wj0A  g.72.1.1 * 2e-15 12.0 %
:RPS:PFM   5->44 PF12323 * HTH_14 1e-09 57.5 %
:RPS:PFM   71->283 PF01385 * Transposase_2 2e-31 39.1 %
:RPS:PFM   295->364 PF07282 * Transposase_35 6e-13 53.6 %
:HMM:PFM   68->282 PF01385 * Transposase_2 3e-47 23.5 213/227  
:HMM:PFM   295->362 PF07282 * Transposase_35 9.2e-25 43.9 66/69  
:HMM:PFM   1->45 PF12323 * HTH_14 3.7e-20 51.1 45/46  
:BLT:SWISS 5->355 YSNA_STRPR 1e-64 44.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56362.1 GT:GENE BAD56362.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1675323..1676468 GB:FROM 1675323 GB:TO 1676468 GB:DIRECTION + GB:PRODUCT putative transposase GB:PROTEIN_ID BAD56362.1 LENGTH 381 SQ:AASEQ MQLRYNFRVYPTPGQRIALAKAFGCARVVYNDALRTRQDAYEAGERLSDTDVQRRVVTEAKKTDSRVWLSEVASVALVQACQDARAAYRNWFDSMSGKRAGRKVGRPRFRSRKDNRQAIRLTRNGFSLKPNRKLYAAKIGDLDVRWSRDLPSAPSSVTLIKDAAGRYFASFVVDVDTEPLPATDPEVGIDLGLSTFAVLSNGKTIESPKFLRRAERKLRKAQQSLSRKQQGSNNRAKARVRVAKAHAKIRDSRADWAHKNTTALIRENQAVYVEDLAVSGLARTNLAKSVHDAAWGTFLRMLEDKAARYGRVVHKIDRWFPSSQTCHVCGRVDGPKPLSVRTWSCPCGAVHDRDLNAAKNILAAGRAERLNACGETVSLSA GT:EXON 1|1-381:0| BL:SWS:NREP 1 BL:SWS:REP 5->355|YSNA_STRPR|1e-64|44.3|343/402| SEG 235->248|rakarvrvakahak| RP:PDB:NREP 1 RP:PDB:REP 105->210|3ee7B|2e-23|12.4|105/115| RP:PFM:NREP 3 RP:PFM:REP 5->44|PF12323|1e-09|57.5|40/46|HTH_14| RP:PFM:REP 71->283|PF01385|2e-31|39.1|202/207|Transposase_2| RP:PFM:REP 295->364|PF07282|6e-13|53.6|69/70|Transposase_35| HM:PFM:NREP 3 HM:PFM:REP 68->282|PF01385|3e-47|23.5|213/227|Transposase_2| HM:PFM:REP 295->362|PF07282|9.2e-25|43.9|66/69|Transposase_35| HM:PFM:REP 1->45|PF12323|3.7e-20|51.1|45/46|HTH_14| RP:SCP:NREP 1 RP:SCP:REP 305->354|1wj0A|2e-15|12.0|50/58|g.72.1.1| OP:NHOMO 1020 OP:NHOMOORG 233 OP:PATTERN ------1-7114--C---------2--1423B-1---2----------215F3-----1---1----- ----1------------33-3-----32333-2---2-76-2AP------------------1---B3213----41----------2--------------------5---------------------------C-12----4-33Y4OH*DD11------21a3AM27-------------38-----19-33333-5C34331351-----2345111-D3------4----------------1----16-2--19-H2--5512-2---------------------------------------------------33---------2-4--922-53M34--4--11222A----2---1-1--7-----------------------------------------3-2--------------------------------111111112-----------------------------------------------B88-3B-------1-------1----1------------B1----------------------2-------------------------------------------3-2-51----------2-----2----31--------3------------2H-------------3--12221-1-32-22132113132-3111111-------D---1---1---1111121111233------------------------------1-------------54---------1J5----------------------------------------------------1-32----------1115--1-----------------------------1-54-211-17-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 105 STR:RPRED 27.6 SQ:SECSTR ########################################################################################################ccEEEEEEEEccTTTcccEEEEEEEEcccEEEEEEEcccccEEEEEcTTccEEEEEccccEEEEEccTTccEEEEEEEcTTccHHHHHHHHHHHHccc#ccccccc########################################################################################################################################################################### DISOP:02AL 225-235, 376-381| PSIPRED ccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccEEEEccccEEEEEccEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEEccccccccccccEEEEEccccEEEEEEccEEEcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEEEEccccEEccHHHHHHHHHHHccccccEEccccccccc //