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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56405.1
DDBJ      :             putative phage integrase
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  624/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   118->276 2a3vB PDBj 1e-12 37.6 %
:RPS:PDB   13->282 2a3vA PDBj 1e-24 24.5 %
:RPS:SCOP  13->111 1crxA1  a.60.9.1 * 2e-07 9.1 %
:RPS:SCOP  125->277 1aihA  d.163.1.1 * 5e-20 24.0 %
:HMM:SCOP  105->288 4crxA2 d.163.1.1 * 4.9e-37 31.3 %
:RPS:PFM   127->280 PF00589 * Phage_integrase 7e-16 38.3 %
:HMM:PFM   119->278 PF00589 * Phage_integrase 1.5e-33 28.8 156/173  
:BLT:SWISS 127->277 XERC_XANCP 5e-19 42.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56405.1 GT:GENE BAD56405.1 GT:PRODUCT putative phage integrase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1706994..1707866) GB:FROM 1706994 GB:TO 1707866 GB:DIRECTION - GB:PRODUCT putative phage integrase GB:PROTEIN_ID BAD56405.1 LENGTH 290 SQ:AASEQ MRKKTPASWAPTLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWAGQQNWATETRRSYRSSCMKFWRWGIASGLTDTNPVEEWPRIPGAAANPRPAPDRVYRAALAAADPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDIAALIRAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVDRMEVRAAVASAAA GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 127->277|XERC_XANCP|5e-19|42.3|142/322| SEG 283->289|aavasaa| BL:PDB:NREP 1 BL:PDB:REP 118->276|2a3vB|1e-12|37.6|157/320| RP:PDB:NREP 1 RP:PDB:REP 13->282|2a3vA|1e-24|24.5|265/313| RP:PFM:NREP 1 RP:PFM:REP 127->280|PF00589|7e-16|38.3|149/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 119->278|PF00589|1.5e-33|28.8|156/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 13->111|1crxA1|2e-07|9.1|99/110|a.60.9.1| RP:SCP:REP 125->277|1aihA|5e-20|24.0|129/170|d.163.1.1| HM:SCP:REP 105->288|4crxA2|4.9e-37|31.3|182/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 986 OP:NHOMOORG 640 OP:PATTERN --1-------------2----------------11--------11111-------1111--111---- 22211132222-2322211-12--22222221-1113--1-122-11-21112221-2----2-1--1---11111332-211-----221111221--21222211211-------111111111111-1---22---1122211--2-----------------1-----------------11----1122222222222222222222222222332311122222231---------------111112122112-22122--22121212-----------------1-----------------------------12-1111111111111-11-111-11122-1131112-2121211111--2-932221112-223213222211222222222222-112111111321211321C92222211125212222221333333333222121-22-1-1111111----------------1-22121-----111111-1111113911111112211211--111221212223122121121-222222122222--11211121-1222-2113324131121111-12111111111-1111111111111----211--113121331-11111111-11-2--22111------111-1111111111111-11111111111111111111112-3-21111111111111111-11111112-111111111111---2---------1212-1111-11----1---11111111122122321221221121233----------11141111111-1211232332221111--11332222---------12-------------------------11----1---122 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 93.8 SQ:SECSTR ##########cHHHHHHHHHHHTTccHHHHHHHHHHHHHHHTTcccccGGGccHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHTccccGccccTTcccccccccccccccccHHHHHHHTTcccHHHHHHHHHHHHccccHHHHHTccGGGEETTTTTEEEEEEETTTEEEEEEccGGGHHHHHTcTTTcTTGGGcGGGcccccccccccccHHHHHHHHHHHcHHTTcccccccHHHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHGGGcccccccHH######## DISOP:02AL 1-3| PSIPRED ccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEEEEccccEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcc //