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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56410.1
DDBJ      :             putative oxidoreductase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  302/915 : Eukaryota  51/199 : Viruses  0/175   --->[See Alignment]
b.68.2
:350 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->331 3dasA PDBj 1e-74 53.7 %
:RPS:SCOP  39->255 1c9uA  b.68.2.1 * 9e-34 34.3 %
:HMM:SCOP  20->352 1cruA_ b.68.2.1 * 1.1e-46 33.0 %
:RPS:PFM   218->247 PF07995 * GSDH 5e-04 60.0 %
:HMM:PFM   218->296 PF07995 * GSDH 1.6e-16 36.4 77/106  
:HMM:PFM   47->69 PF01436 * NHL 0.00044 34.8 23/28  
:BLT:SWISS 37->328 Y1608_SYNY3 1e-24 36.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56410.1 GT:GENE BAD56410.1 GT:PRODUCT putative oxidoreductase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1712304..1713356) GB:FROM 1712304 GB:TO 1713356 GB:DIRECTION - GB:PRODUCT putative oxidoreductase GB:PROTEIN_ID BAD56410.1 LENGTH 350 SQ:AASEQ MLAAVLMLAACADDPAIPDATRTAPPAPAEIPGFGPAAEIARDIDVPWGLAFLPDGVALVAERDTGRILRIEPGRAPEEVYRVPGVAARGEGGLLGLAVSPRYPDDGFVYAYLTTADDNRIVRFRLDGPADPIFTGIANTSFHNGGRLAFGPDGLLYVGTGDAGEPDLAQDPASPNGKILRLTPDGAPAPGNPTPGSPVYSRGHRNVQGLAWDSTGRLFAAEFGQNRYDEINLITPGADYGWPEVEGAGGSADGYTDPLLTWTTDEASPSGIAIADQTLYAAALRGERLWTATLTGDTLTDDRAVLDGTYGRLRTVTLAPDGALWLTTSNTDGRGDVRSGDDRILRFPGQ GT:EXON 1|1-350:0| BL:SWS:NREP 1 BL:SWS:REP 37->328|Y1608_SYNY3|1e-24|36.7|283/412| SEG 1->32|mlaavlmlaacaddpaipdatrtappapaeip| SEG 85->98|gvaargeggllgla| SEG 289->302|lwtatltgdtltdd| SEG 332->343|dgrgdvrsgddr| BL:PDB:NREP 1 BL:PDB:REP 40->331|3dasA|1e-74|53.7|287/329| RP:PFM:NREP 1 RP:PFM:REP 218->247|PF07995|5e-04|60.0|30/103|GSDH| HM:PFM:NREP 2 HM:PFM:REP 218->296|PF07995|1.6e-16|36.4|77/106|GSDH| HM:PFM:REP 47->69|PF01436|0.00044|34.8|23/28|NHL| GO:PFM:NREP 3 GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF07995|IPR012938| GO:PFM GO:0016901|"GO:oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor"|PF07995|IPR012938| GO:PFM GO:0048038|"GO:quinone binding"|PF07995|IPR012938| RP:SCP:NREP 1 RP:SCP:REP 39->255|1c9uA|9e-34|34.3|216/444|b.68.2.1| HM:SCP:REP 20->352|1cruA_|1.1e-46|33.0|312/0|b.68.2.1|1/1|Soluble quinoprotein glucose dehydrogenase| OP:NHOMO 499 OP:NHOMOORG 363 OP:PATTERN ------------------11----2--21-12--------------2-------------------12 --2-1--1------111----31112-----122222333-1-111--111-111-----112-2431111-----------1----------------2-2-1132611--------------------1----1---22---1111-111-1111------11-11-11------------1--11----------------------111--------1111-------1--------------------------------------------------------------------------------------------------------------------------------------------2-21111--------1-11-11111----------1-2222112-1-2-111121111123-12322121111111--------------11-----------------------------111311-11-1------------------------3-1------12111-1112-11--211---------1--11---1--11--------11-1----11111441-----------------------------1-31211-11-1111--1---1--1-11-----211------21-1-1-111111111--111111111111111111111111----1-1-----1-1-11--11-1--1--1---------------11111------2-1---------------3332311-1-1311111111211111111-------------1-----1111111111111112-------111122-----------------------------------------------1- ------3--------------------------------------------------1----------------------------------------------------6142234211-2-1311-13621116-1-121122-1-1-21121212211--11---------------------211-1-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 83.7 SQ:SECSTR ######################################EEEcccccEEEEEEcTTccEEEEETTTcEEEEEcTTTccEEEEEcTTccccTTccEEEEEEcTTHHHHccEEEEEEccccEEEEEEccTcccEEEEEEEccccccccccEEEcTTcEEEEEcccTTcGGGTTcTTccTTcEEEEcTTccccTTcccTTccEEEcccccccEEEEcTTccEEEEEccccccEEEEEEcTTccccTTTcccccccTTTcccccEEEcTTTccEEEEEEETTEEEEEEcTTccEEEEEETTEEccccEEEcTTTcccEEEEEEEETTEEEEEEcTT################### DISOP:02AL 19-33| PSIPRED cHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccEEEEEccccEEEEEEEcccEEEEEcccccccccEEEEEEEEccccccEEEEEccccccccEEEEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEccccEEEEEEccccccccccccccccEEEEEEEccccEEccccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEcccccccccccccccccccccccEEEEcccccccccEEEEcccEEEEEEEccEEEEEEEcccccccccEEEcccccEEEEEEEccccEEEEEEccccccccccccccEEEEEccc //