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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56411.1
DDBJ      :             putative lipase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  39/915 : Eukaryota  48/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:395 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->388 2veoA PDBj 1e-40 32.6 %
:RPS:PDB   167->224 3ds8A PDBj 6e-04 21.4 %
:RPS:SCOP  138->231 1xfdA2  c.69.1.24 * 7e-06 19.6 %
:HMM:SCOP  6->225 1lpbB2 c.69.1.19 * 0.00041 22.0 %
:HMM:SCOP  139->382 2hu7A2 c.69.1.33 * 8.3e-18 24.3 %
:RPS:PFM   137->386 PF03583 * LIP 4e-21 34.6 %
:HMM:PFM   137->393 PF03583 * LIP 1.1e-52 32.9 255/291  
:BLT:SWISS 34->395 LIP3_CANAL 4e-31 30.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56411.1 GT:GENE BAD56411.1 GT:PRODUCT putative lipase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1713672..1714859) GB:FROM 1713672 GB:TO 1714859 GB:DIRECTION - GB:PRODUCT putative lipase GB:PROTEIN_ID BAD56411.1 LENGTH 395 SQ:AASEQ MSRLSTRILIVLLSILSLGVVGAPAQAEPRYPEPDPDPFYTAPADIGSFQPGDVVRTRKIDTGPYVGTEGWQVAFRSTNSGGNAIMGITTVLLPAGVHNPPLVSYQALINSLGSRCNPSRSLFNGELQDAVGAMLPIGRGWAISLPDYLGPSVAYGAAKLSGMVTLDSVKAVQKVAELGLADSPVAIAGYSGGGMATAWAAALQPSYAPDLKLAAAVAGGIPADLEQMALSLGFDPHPGFGLAFAAAMGLEREYPDRLPISDQLNENGLWFREFTHDACRRFLLFHGAFRSAEQMAASKSLMDSPAAREVLRENSLRYFPGVPTAPTYIWQGRYDTLTAFDPVAETADRYCKAGAPVTMVPYDIAEHMTAAVAGFVDAWNYVEARFRGDPVTSSC GT:EXON 1|1-395:0| BL:SWS:NREP 1 BL:SWS:REP 34->395|LIP3_CANAL|4e-31|30.7|355/471| TM:NTM 1 TM:REGION 4->25| SEG 2->22|srlstrilivllsilslgvvg| SEG 239->250|gfglafaaamgl| BL:PDB:NREP 1 BL:PDB:REP 32->388|2veoA|1e-40|32.6|350/430| RP:PDB:NREP 1 RP:PDB:REP 167->224|3ds8A|6e-04|21.4|56/245| RP:PFM:NREP 1 RP:PFM:REP 137->386|PF03583|4e-21|34.6|246/274|LIP| HM:PFM:NREP 1 HM:PFM:REP 137->393|PF03583|1.1e-52|32.9|255/291|LIP| GO:PFM:NREP 2 GO:PFM GO:0004806|"GO:triglyceride lipase activity"|PF03583|IPR005152| GO:PFM GO:0016042|"GO:lipid catabolic process"|PF03583|IPR005152| RP:SCP:NREP 1 RP:SCP:REP 138->231|1xfdA2|7e-06|19.6|92/258|c.69.1.24| HM:SCP:REP 6->225|1lpbB2|0.00041|22.0|177/0|c.69.1.19|1/1|alpha/beta-Hydrolases| HM:SCP:REP 139->382|2hu7A2|8.3e-18|24.3|177/0|c.69.1.33|1/1|alpha/beta-Hydrolases| OP:NHOMO 186 OP:NHOMOORG 87 OP:PATTERN -------------------------------------------------------------------- ----1-1----2-182111-11--11111111122256A7-1---------------1-------11-1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-----------------------------------------------------------------------1111----------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------121-223161651-111112111-1111-1111113222--11------3----3--1-1------A9A44------2---------2------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 351 STR:RPRED 88.9 SQ:SECSTR ###############################ccGGGcGGGcccTTGGGccTTcEEEEEEEHHHHHTTcEEEEEEEEEEcTTccEEEEEEEEEEccccccccEEEEEcccccccGGGcHHHHHcccccTTGGGGTcHHHHHHHHHTEcTTTTTTcTTcHHHHHHHHHHHHHHHHHHHHHHcTTccEEEEEETHHHHHHHHHHHHcTTcTTccEEEEEEEEcccTTHHHHHHHH##TTcTTTHHHHHHHHHHHHHcHHTccHHHHHHHHHHTcTTc####cHHHHHHHcTTccGGGGcccTTGGGcTTHHHHHHHccccccccccccEEEEEEETTcccccHHHHHHHHHHHHHTTcEEEEEEEccccHHHHHHHTHHHHHHHHHHHHHT####### DISOP:02AL 1-4, 29-30, 390-395| PSIPRED ccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEcHHHcccccccccHHHcccccHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHcHHHHHHHHHHHHccccccccc //