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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56419.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  65/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.43.1
:472 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   41->287 2e1tA PDBj 6e-09 10.8 %
:HMM:SCOP  4->175 1q9jA1 c.43.1.2 * 3.3e-08 23.3 %
:RPS:PFM   7->273 PF03007 * UPF0089 7e-48 46.4 %
:RPS:PFM   381->467 PF06974 * DUF1298 4e-19 51.2 %
:HMM:PFM   4->273 PF03007 * UPF0089 8.5e-77 36.6 262/263  
:HMM:PFM   380->467 PF06974 * DUF1298 1.2e-06 27.6 87/153  
:BLT:SWISS 1->455 YE43_MYCTU 3e-86 40.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56419.1 GT:GENE BAD56419.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1724560..1725978) GB:FROM 1724560 GB:TO 1725978 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56419.1 LENGTH 472 SQ:AASEQ MERLTGLDASFLYLETGTQHLHVCALLILDPTAEGADYSFDAFKAELGRRLAYVPQMRRRLRQVPLNLDHPLWVEDADFDLDYHIRRYGLPRPGGRKELADLVGDIASTPMDRSRPLWQMSVVEGVDGDKVAVISKYHHAAVDGITGANMMMHLCDFEPGATRTEAPEPPDAHRPPRPEPQPSDWRLLADAAVRLPARAGVVGMLPKTVGMLAGFVMRRRATDMPGMAIPLTAPRTPFNKAITPHRTVAFTATDLDTVKEIKEAFAVKVNDVVLAAVGGTLRRYLERRGELPDRSLIASVPVSVHESSRHTEGINKVSSLFCELGTDIADPVERLSKVAEANKGAKDEHELIGSDFLQDWTQYAPPNTFRLAMRLYSSFKLAERHPVVHNLVVSNVPGPPMPLYFLGVKVLGIYPFGPVFHGAGLTITALSNNGHLDFGLIACKELVPDVHELANEIPDALEELRQAARQRG GT:EXON 1|1-472:0| BL:SWS:NREP 1 BL:SWS:REP 1->455|YE43_MYCTU|3e-86|40.1|444/459| SEG 165->182|eapeppdahrpprpepqp| RP:PDB:NREP 1 RP:PDB:REP 41->287|2e1tA|6e-09|10.8|222/440| RP:PFM:NREP 2 RP:PFM:REP 7->273|PF03007|7e-48|46.4|252/259|UPF0089| RP:PFM:REP 381->467|PF06974|4e-19|51.2|86/152|DUF1298| HM:PFM:NREP 2 HM:PFM:REP 4->273|PF03007|8.5e-77|36.6|262/263|UPF0089| HM:PFM:REP 380->467|PF06974|1.2e-06|27.6|87/153|DUF1298| HM:SCP:REP 4->175|1q9jA1|3.3e-08|23.3|150/175|c.43.1.2|1/1|CoA-dependent acyltransferases| OP:NHOMO 367 OP:NHOMOORG 72 OP:PATTERN -------------------------------------------------------------------- -11-----------5A9FE-FB11N8FFFFFCDFGF58I91---------------------5-121111--------------------------------------1------------------------------22------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------1--2----------------------------------------1----1121---3-----------------------------------------------1------------------------------11-14---------------------------------------------------------------------------------------------------------------------------------------24-----------------1111111112--------------------------------1----------------------------------------------------------------------------------- --------------2---------------------------------------------------------------------------2-----------1----1-------------------------------------------------------1---------2-------1----------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 85.6 SQ:SECSTR ###ccGGGGcHHHHTcEEEEEEEEEc####ccGGGHHHHHHHHHHHHHHHHHHcGGGGcEEEEEEEcTTccEEEEEEEEcccGGGTcccccEEGGGcGGGcccccccEEccccEEEEcEEEEEEEETTTEEEEEEEEcGGGccHHHHHHHHHHHHHHHHTTccc############HHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHHHcHHHHHHHcccccccccccEEEEEEEEcHHHHHHHHHHHHHHcTTcccccHHHHHHHHHHHHHHHHHcc###HcccEEEEEEEEEcccccTTccc#ccEEEEEEEEEGGGTcHHHHHHHHHHHHHHHHHHH########HHHHHTTcccccHHHHHcccEEEEE##ccTTccGGGccccccccEEEEGGGGGccEEEEEccccTTcEEEEEEEEHHHHH################################### DISOP:02AL 1-2, 168-184, 338-353, 471-472| PSIPRED cccccHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEccEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEcHHHcccHHHHHHHHHHHHHHHHHHHHHcc //