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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56430.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:263 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   172->246 1bl0A PDBj 3e-14 24.0 %
:RPS:SCOP  172->246 1v4aA1  a.24.16.4 * 3e-10 12.0 %
:HMM:SCOP  147->199 1bl0A1 a.4.1.8 * 1.1e-08 26.4 %
:HMM:SCOP  201->246 1d5yA2 a.4.1.8 * 7.8e-06 30.4 %
:HMM:PFM   175->198 PF00165 * HTH_AraC 0.00045 41.7 24/42  
:HMM:PFM   223->247 PF00165 * HTH_AraC 1.5e-07 45.8 24/42  
:BLT:SWISS 169->244 VIRF_YEREN 3e-05 31.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56430.1 GT:GENE BAD56430.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1736318..1737109 GB:FROM 1736318 GB:TO 1737109 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56430.1 LENGTH 263 SQ:AASEQ MTRFALPETCAADVGTARLWVRLGHAIYLGPSPGLDPHSTAIPSLGVGVDAPFLVRVPEHGDIEARSFLFRARTIHHVARSSGRMLYCFFDPTSTRVAHCLGGMNRAVGGYPIEHRHEAELIALCERDPLDVDRVLELAGMPLPVIRDPRIAAVAAAIRADPAQPQRASEQARGAGLSTSYFLRTFAAQTGTSFRRYVQWARMLRVARAYAAGHDITRAGVDAGFASPSHFSDTFRAMFGLTPTAFLGLGGTLRIIEDQPRPA GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 169->244|VIRF_YEREN|3e-05|31.6|76/271| SEG 145->168|virdpriaavaaairadpaqpqra| RP:PDB:NREP 1 RP:PDB:REP 172->246|1bl0A|3e-14|24.0|75/116| HM:PFM:NREP 2 HM:PFM:REP 175->198|PF00165|0.00045|41.7|24/42|HTH_AraC| HM:PFM:REP 223->247|PF00165|1.5e-07|45.8|24/42|HTH_AraC| RP:SCP:NREP 1 RP:SCP:REP 172->246|1v4aA1|3e-10|12.0|75/151|a.24.16.4| HM:SCP:REP 147->199|1bl0A1|1.1e-08|26.4|53/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 201->246|1d5yA2|7.8e-06|30.4|46/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 15 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- --------------1------1---1------3--21-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------11-1--------------------------------------------------------1----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 29.7 SQ:SECSTR ########################################################################################################################################################################GGGHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHTTcccHHHHHHHHHHHHcccHHHH################# DISOP:02AL 248-263| PSIPRED cccHHHHHHHHHccccccHHHHccccEEEccccccccccccccccEEEccccccEEEEccccccEEEEEEccccHHHcccccccEEEEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccc //