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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56437.1
DDBJ      :             putative peroxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  184/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.58.4
:433 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   131->368 2iizA PDBj 1e-05 28.1 %
:RPS:PDB   48->431 2d3qA PDBj 1e-54 20.3 %
:RPS:SCOP  51->419 2gvkA1  d.58.4.14 * 1e-61 19.9 %
:HMM:SCOP  51->428 2gvkA1 d.58.4.14 * 1.1e-80 41.3 %
:RPS:PFM   124->421 PF04261 * Dyp_perox 6e-41 47.9 %
:HMM:PFM   56->421 PF04261 * Dyp_perox 8e-79 38.9 298/313  
:BLT:SWISS 42->432 YWBN_BACSU 1e-61 39.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56437.1 GT:GENE BAD56437.1 GT:PRODUCT putative peroxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1742949..1744250) GB:FROM 1742949 GB:TO 1744250 GB:DIRECTION - GB:PRODUCT putative peroxidase GB:PROTEIN_ID BAD56437.1 LENGTH 433 SQ:AASEQ MSESTTVGSNSGVSRRALFGGALLAAGAASAGVAVGRRGGSETAASAIEPFQGPHQAGIATALQSTALFLACDMARPDRAALRDLLASWTEAARALTAGARVPDTASTPPGFSAHTDFATGLAPARLTITLGLGPGIFDDRFGLADHRPRHLHPLPAFAGDALNPAWSGGDVLAQICADDPQIVSHAFRTLRARMPGLARMRWTQQGFLGLPADGGTPRNMFGHKDGTANPRPGTPEFDRTVWVDSPDEPAWFHGGSYLVFRKIRMKVADWDQLSPAEQDRVVGRRRADGAPMNGGGEFDPIDLDARSPDGEPRTPAHAHVRLVHGIPMLRRSYNYDYGVLIANAGGSPDPTPELPHTHAPGTPEHSHGGHSTLDVGLLFAAYMNNPPEQFIRAQHALATDRMNALVQHTGSAFFAVPPGVGESGHLAAELVR GT:EXON 1|1-433:0| BL:SWS:NREP 1 BL:SWS:REP 42->432|YWBN_BACSU|1e-61|39.7|355/416| SEG 20->41|ggallaagaasagvavgrrggs| BL:PDB:NREP 1 BL:PDB:REP 131->368|2iizA|1e-05|28.1|203/294| RP:PDB:NREP 1 RP:PDB:REP 48->431|2d3qA|1e-54|20.3|345/439| RP:PFM:NREP 1 RP:PFM:REP 124->421|PF04261|6e-41|47.9|257/295|Dyp_perox| HM:PFM:NREP 1 HM:PFM:REP 56->421|PF04261|8e-79|38.9|298/313|Dyp_perox| RP:SCP:NREP 1 RP:SCP:REP 51->419|2gvkA1|1e-61|19.9|291/309|d.58.4.14| HM:SCP:REP 51->428|2gvkA1|1.1e-80|41.3|300/0|d.58.4.14|1/1|Dimeric alpha+beta barrel| OP:NHOMO 228 OP:NHOMOORG 189 OP:PATTERN -------------------------------------------------------------------- ----5111111221311----2---2------2222342313311-111112--131---111-11-2341--------------------------------------------------------------------------------------------------------------------------1--------------------1------1-1-1-11--11-111111-11111111--1----------------------------------1---111-1------------------1--111-----------------------------------------------------1-------------1-------1-------------1---1--1-1-----------------------2-------11111111-22----1------------------------------------11--111-11-----111-------211-----------------------------1111111-------------------------------------------------------------------------------------------------------------111-111111111111-1111111111111111111111----1----------------11--1111--111111111111----------------1-111-----------------------------111------111------------------------------------------------------------------------------------------------- -------------------------------------------------11111------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 374 STR:RPRED 86.4 SQ:SECSTR ###############################################cccTTTc#cHHHHTcccEEEEEEEEccHHHHHHHHHHHHHHHcccHHHHHccGGGcccEEEEEEEcHH#######HHHHTTcccccccccGHHGGccTTTHHHHTccGGGccTTcEEcccccccEEEEEEEccHHHHHHHHHHHHHcGGGEEEEEEEEEEccc##cGGGTTccTTcccccccccEccccccTTccEEcGccccGGGTTcEEEEEEEEEEcHHHHHHHHHTTccHHHcccTcTcccTTTccccccHHHHTcTTTccccccTTcHHHHHcTTccEEccEEEccccEEEEEEccTHHHHHHHHHTccccHHHHTTTccccccEEEEEEEEccGGGTHHHHHTTTTTcTTccccccccccccTTTccccccEEEcccc## DISOP:02AL 1-12| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHccccccHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHccEEEEEEEEEEEEcccccccccHHcccccccccccccHHHHHHEEEEccccccccccccEEHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccEEEccccccccccccHHccccccHHHHHHccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccHHHHHcccccEEEEEccccccHHHHHHHHcc //