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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56440.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  81/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.62.1
:421 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->163 3ibzA PDBj 5e-17 35.7 %
:RPS:PDB   28->149 2a5iA PDBj 6e-06 18.3 %
:RPS:PDB   358->421 3dcaA PDBj 2e-05 9.5 %
:HMM:SCOP  216->407 1qc5A_ c.62.1.1 * 1.1e-11 18.1 %
:RPS:PFM   48->156 PF02342 * TerD 4e-15 44.4 %
:HMM:PFM   65->155 PF02342 * TerD 8e-17 36.3 91/128  
:BLT:SWISS 1->161 TERD_SERMA 4e-16 36.0 %
:BLT:SWISS 196->421 YCBR_BACSU 2e-27 31.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56440.1 GT:GENE BAD56440.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1745364..1746629 GB:FROM 1745364 GB:TO 1746629 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56440.1 LENGTH 421 SQ:AASEQ MVTSLVKGQNALLESERVVVSLRTEAAADVSALLVTAAGTVRSDADFVFYNQPVAPGVRLVAGSPAALEISPAQLPADIAQVRAVLTLDDPGRRFGEFAPPVVTVADGAGTPLVEYRIDGLSGESVVIALELYRRGQQWKIRAVGQGYAGGFAALVTDHGVQVDDEPPAREPAAAEAVPQVRTVPGEAALSLEKRATLDLRKREVAKVLLDKRALGVRARVVLVIDKTGSMHKQYRRRVVHRVVERMVPIATQLDDDGTLEAYLYAVSYAKLPDITVAEAEQWAQTYLHLSGVHEGIDYNRLGGHNVEPPIIRAVLDTVRPGDGPTLVLFFTDGGFAKKREIADLIREAAALPAFWQFIGLGKANYGLLRELDDLDGRLVDNAGFFALDDIDQVDDAQLYSRLLGEFPDWLRAARAAGVVR GT:EXON 1|1-421:0| BL:SWS:NREP 2 BL:SWS:REP 1->161|TERD_SERMA|4e-16|36.0|161/192| BL:SWS:REP 196->421|YCBR_BACSU|2e-27|31.9|216/243| SEG 166->177|epparepaaaea| SEG 213->224|ralgvrarvvlv| SEG 236->248|rrrvvhrvvermv| SEG 367->381|gllrelddldgrlvd| BL:PDB:NREP 1 BL:PDB:REP 24->163|3ibzA|5e-17|35.7|140/176| RP:PDB:NREP 2 RP:PDB:REP 28->149|2a5iA|6e-06|18.3|109/306| RP:PDB:REP 358->421|3dcaA|2e-05|9.5|63/127| RP:PFM:NREP 1 RP:PFM:REP 48->156|PF02342|4e-15|44.4|108/125|TerD| HM:PFM:NREP 1 HM:PFM:REP 65->155|PF02342|8e-17|36.3|91/128|TerD| GO:PFM:NREP 1 GO:PFM GO:0006950|"GO:response to stress"|PF02342|IPR003325| HM:SCP:REP 216->407|1qc5A_|1.1e-11|18.1|177/0|c.62.1.1|1/1|vWA-like| OP:NHOMO 245 OP:NHOMOORG 81 OP:PATTERN -------------------------------------------------------------------- ------------------------------------9685-6573----------------------ADB--------------------------------------------------------------------------------11---------------------------------4-------2222221112121112--2223112---2---------3---------------------------------------------------------------------------------------------21------------2--2----2----------32--------------------------------------------------------------------------------------------------------2-------------------------------------------------------------3-----------------3------1----------------2-----------------------------------------------------------------------5----------------------1----------4------26----3---3---------3---------33----2---------------------------23333333333------------------------------1--------4343----------------231------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 328 STR:RPRED 77.9 SQ:SECSTR #######################ccccTTEEEEEEEEEEEcTTcTTcccccccccccccccHHHHHHHHHHHTTccTTccEccccccHHHHTcccccHHHHHHTHHHHHHHEEEEEEHHTccHHHHHHHHHHHHHcTEcTTcccETTccTHHHHHHHHTTccc#############################################################EEcccccccHHHHHHHHHHHHTTccccTTccEEEEEEEcccEEEEEcTTccccHHHHHHHHTTcccccc#########ccccHHHHHHHHHHTTTcTTTTEEEEEEEEccccTTGGGHHHHHHHHHHTTcEEEcccccHHHHHHHHHHcccccEEEHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHTcEEEEE DISOP:02AL 1-2, 6-7, 166-200| PSIPRED ccEEccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEccccccccccEEEccccEEEEEEccccccccEEEEEEEEccccccHHHccccEEEEEcccccEEEEEEcccccccEEEEEEEEEEEcccEEEEEcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHccccEEEccEEEEccccHHcccHHHHHHHHHHHHHHHHHHHHHccccc //