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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56443.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  11/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:240 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->55 2ibdB PDBj 5e-04 45.7 %
:RPS:PDB   7->54 2dt5A PDBj 5e-08 12.8 %
:RPS:SCOP  16->54 1jt0A1  a.4.1.9 * 3e-09 28.2 %
:HMM:SCOP  7->82 2fd5A1 a.4.1.9 * 3.3e-13 31.6 %
:HMM:SCOP  85->236 1zk8A2 a.121.1.1 * 2.6e-05 19.0 %
:HMM:PFM   19->64 PF00440 * TetR_N 3.3e-17 45.7 46/47  
:BLT:SWISS 15->226 Y1846_MYCBO 7e-06 28.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56443.1 GT:GENE BAD56443.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1747520..1748242 GB:FROM 1747520 GB:TO 1748242 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56443.1 LENGTH 240 SQ:AASEQ MKESKPRGRAPMVAEADIRRVARALLAEQGPDAVTLRAIARTLGITAPALYRHYDSRDALLEALRLECCAELAAELSAEIDALPDNGLVQFFAICKGFRRWALANTKEFTLVFASPGAAAGMSSRFTEPFGRIFLAAAGRLLSGYRIITPATEVIPPALREDLAHFRTELLAALSESGQEFPAEKLDLGVTYLMIQIWARLYGHVTLEVFGNYPIPLSDPEVMFDAVLADLARSAGMLEG GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 15->226|Y1846_MYCBO|7e-06|28.2|195/234| SEG 56->83|srdallealrleccaelaaelsaeidal| BL:PDB:NREP 1 BL:PDB:REP 21->55|2ibdB|5e-04|45.7|35/186| RP:PDB:NREP 1 RP:PDB:REP 7->54|2dt5A|5e-08|12.8|47/210| HM:PFM:NREP 1 HM:PFM:REP 19->64|PF00440|3.3e-17|45.7|46/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 16->54|1jt0A1|3e-09|28.2|39/71|a.4.1.9| HM:SCP:REP 7->82|2fd5A1|3.3e-13|31.6|76/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 85->236|1zk8A2|2.6e-05|19.0|105/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 15 OP:NHOMOORG 11 OP:PATTERN -------------------------------------------------------------------- ------------------------------------2----2-2-------------1------121---1---------------------------------------------------------1-----------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 193 STR:RPRED 80.4 SQ:SECSTR #HHHHHccHHHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHH#####cHHHHHHHHHHHHGGGcccccccTTcHHHHHHHHHHHHHHHHHHcTTHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTccTTTcHHHHHTHHHHHcccHHHHHHHHHHHHHHHHHH######################################### DISOP:02AL 1-17| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccc //