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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56444.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  75/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.4.1
:760 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->165 3ibzA PDBj 4e-13 31.6 %
:BLT:PDB   715->756 2qgpC PDBj 7e-04 40.5 %
:RPS:PDB   663->755 1bxiB PDBj 9e-11 20.0 %
:RPS:SCOP  696->759 1e7dA2  d.4.1.5 * 3e-09 17.2 %
:RPS:PFM   47->158 PF02342 * TerD 1e-11 38.4 %
:RPS:PFM   716->758 PF01844 * HNH 3e-06 51.2 %
:HMM:PFM   716->759 PF01844 * HNH 4.4e-14 50.0 44/52  
:HMM:PFM   69->157 PF02342 * TerD 1.6e-11 38.2 89/128  
:HMM:PFM   414->436 PF10708 * DUF2510 2.4e-10 56.5 23/36  
:HMM:PFM   440->457 PF09723 * CxxC_CxxC_SSSS 0.00093 52.9 17/42  
:BLT:SWISS 1->164 TERD_SERMA 8e-14 32.5 %
:BLT:SWISS 705->754 MCRA_ECOLI 8e-06 46.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56444.1 GT:GENE BAD56444.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1748261..1750543) GB:FROM 1748261 GB:TO 1750543 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56444.1 LENGTH 760 SQ:AASEQ MELSKGAHAPVPTSLLAVAVSWQSEHVVDAHALLLAASGRVRTDRDLVFYNAPRHISQAVTLDQEPAPGTARLSVSLPRTEVDVARIVIGGSLDGGSFADVSGLTVTVLAAEGPVLRFRLDAPDPVTALMFGEFYRRDGAWRFRAVGQGWRSGLAGLVTEFGVSVDDPGGRAGTARPAGPSRHASGSTAPASRAHPDRAVGGTDRTAVTGTDRAAVRGTHQAAGSGTDRAAATGTDGPAATGRAASGSDRAAVTGRTTGSPPSSTVGAASSSVAQAAAAVADADSAGPRTDPIPAVTHRPSGTPFPTRRLSPADLPDAGTPPGDATPATAAPRNPVDLDDMVRPTAADDTDRADDRSPRDRNGPDTLPLTRLSRDEDAPPPAVPVPGARPVDLVRRRPDPAPPPPPPDPARADWYPDPTEPARMRWWDGAHWTSDTYLREQDDPRDCPRCGSPRRRRFFGGLAPCAHCEVEIEEFLTHWHSRAWRVLTGSGPTGEQWEHLWASLRYQRIDEERGRAALRDLGLSYVERLVTFAFADGEIEQAEFEMFEHALVELRLGGPLVEDLRRRVHRGRTLCRLREGDLPVIRTPDLHLDSEEKVHLDLPATQVRTLARGPRHTEGRLIASNKKLRFVGTGAGVELPWTRVVSVQVVEGAVVIAATSARGGATFLVGDPDYVAAALEGALRVAKRLVLTPGQRDSRSISQEIKAEVWQRDGGRCVECGSGHYLEFDHIIPLSRGGATSAANLQILCRACNRRKGARI GT:EXON 1|1-760:0| BL:SWS:NREP 2 BL:SWS:REP 1->164|TERD_SERMA|8e-14|32.5|163/192| BL:SWS:REP 705->754|MCRA_ECOLI|8e-06|46.0|50/277| SEG 32->37|alllaa| SEG 168->182|pggragtarpagpsr| SEG 222->245|aagsgtdraaatgtdgpaatgraa| SEG 253->288|vtgrttgsppsstvgaasssvaqaaaavadadsagp| SEG 316->332|pdagtppgdatpataap| SEG 343->361|rptaaddtdraddrsprdr| SEG 378->418|apppavpvpgarpvdlvrrrpdpappppppdparadwypdp| SEG 644->658|vvsvqvvegavviaa| BL:PDB:NREP 2 BL:PDB:REP 28->165|3ibzA|4e-13|31.6|136/176| BL:PDB:REP 715->756|2qgpC|7e-04|40.5|42/88| RP:PDB:NREP 1 RP:PDB:REP 663->755|1bxiB|9e-11|20.0|90/129| RP:PFM:NREP 2 RP:PFM:REP 47->158|PF02342|1e-11|38.4|112/125|TerD| RP:PFM:REP 716->758|PF01844|3e-06|51.2|43/49|HNH| HM:PFM:NREP 4 HM:PFM:REP 716->759|PF01844|4.4e-14|50.0|44/52|HNH| HM:PFM:REP 69->157|PF02342|1.6e-11|38.2|89/128|TerD| HM:PFM:REP 414->436|PF10708|2.4e-10|56.5|23/36|DUF2510| HM:PFM:REP 440->457|PF09723|0.00093|52.9|17/42|CxxC_CxxC_SSSS| GO:PFM:NREP 3 GO:PFM GO:0006950|"GO:response to stress"|PF02342|IPR003325| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01844|IPR002711| GO:PFM GO:0004519|"GO:endonuclease activity"|PF01844|IPR002711| RP:SCP:NREP 1 RP:SCP:REP 696->759|1e7dA2|3e-09|17.2|64/103|d.4.1.5| OP:NHOMO 223 OP:NHOMOORG 75 OP:PATTERN -------------------------------------------------------------------- ------------------------------------7553-5453-------------------1--9CA------------------------------------------------------------------1-----111----------------------------------------4----1---22222111-121112--11--11--------------1-----------------------------------------------------------------------------------------------------------1--2-------------------------------------------------------------------------------------------------------------------------2-------------------------------------------------------------2-----------------1-----------------------2--------------------------B9-D-----------------------------------------3----------------------1----------3------24----3---2---------2---------33----2---------------------------23333333333---------------------------------------3333----------------121------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 30.3 SQ:SECSTR ###########################EEEcEEEEcTTcccccGGGEEcTTcEEEccccccccccc##ccEEEEEEGGGccTTccEEEEEEEETTHcGGGccccEEEEETTTEEEEEEEHHHHcTTccEEEEEEEEETTEEEEEEEEEEcTTHHHHHHHHTTccc#################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################HHTTcTTcEcHHHHHHHTTHHHHHHHHHHHHHTHHHccccHHHHHHHHTTTcTccccccTccccEEEEcccTTTTcccccGGEEEEcHHHHHHH#### DISOP:02AL 157-463, 757-760| PSIPRED ccccccccccccccEEEEEEEEcccccEEEEEEEEccccEEcccccEEEcccccccccEEEEEcccccccEEEEEEcccccccccEEEEEEEEccccHHHcccEEEEEEEccccEEEEEEccccccEEEEEEEEEEccccEEEEEcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHEEEEEEccccccHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEccccEEEEEcccEEEEEEEccccccEEEEEEEccEEEEEEccccEEEEcEEEEEEEEEccEEEEEEEcccccEEEEEcccHHEEEEccEEEEccEEEEEEEcccccccccHHHHHHHHHHcccEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHcccccccc //