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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56453.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  17/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:145 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   32->78 1bibA PDBj 6e-05 25.5 %
:RPS:SCOP  9->107 1ku9A  a.4.5.36 * 1e-20 22.2 %
:HMM:SCOP  1->135 1ku9A_ a.4.5.36 * 2.1e-11 22.2 %
:HMM:PFM   42->75 PF00392 * GntR 0.00025 32.4 34/64  
:BLT:SWISS 5->89 YVBF_BACSU 6e-06 22.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56453.1 GT:GENE BAD56453.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1759021..1759458) GB:FROM 1759021 GB:TO 1759458 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56453.1 LENGTH 145 SQ:AASEQ MTPDQERFVNTMGDTMAMWNLPRATGRMYGFLLLKGSPSSSDDLRAALGLSSGAVSTATRELVSWGLARTIPRPGSRRLLVEATGGFEQLLAASIERARTFIRALQDAEEITETAEAAARLRDVTDLFAAYVDAGEDVLRRRHNL GT:EXON 1|1-145:0| BL:SWS:NREP 1 BL:SWS:REP 5->89|YVBF_BACSU|6e-06|22.4|85/185| SEG 108->119|aeeitetaeaaa| RP:PDB:NREP 1 RP:PDB:REP 32->78|1bibA|6e-05|25.5|47/294| HM:PFM:NREP 1 HM:PFM:REP 42->75|PF00392|0.00025|32.4|34/64|GntR| RP:SCP:NREP 1 RP:SCP:REP 9->107|1ku9A|1e-20|22.2|99/151|a.4.5.36| HM:SCP:REP 1->135|1ku9A_|2.1e-11|22.2|135/151|a.4.5.36|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 17 OP:NHOMOORG 17 OP:PATTERN -------------------------------------------------------------------- ---------------1--------------------1--------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-----------------------1--1-----------------1-----------------------------------------------------------------1---1------------------------------111-----1----------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 138 STR:RPRED 95.2 SQ:SECSTR ####HHHHHHHHHTTHHHHTccHHHHHHH#HHHTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETTTEEEccccEcHHHcccccHHHHHHTcccccEEEccccccHHHHHHTTGGGccTTcEEEEcccTTcccTT## DISOP:02AL 1-4, 111-118, 143-145| PSIPRED ccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHccHHHEEEcccccHHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //