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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56468.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  34/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:215 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->162 2qwtA PDBj 1e-07 27.9 %
:RPS:PDB   20->202 3c2bB PDBj 7e-16 16.4 %
:RPS:SCOP  20->81 1z77A1  a.4.1.9 * 2e-12 22.6 %
:HMM:SCOP  6->94 1t33A1 a.4.1.9 * 1e-16 29.5 %
:RPS:PFM   22->68 PF00440 * TetR_N 3e-06 44.7 %
:HMM:PFM   22->68 PF00440 * TetR_N 4.1e-18 44.7 47/47  
:BLT:SWISS 19->145 Y2274_MYCBO 8e-09 31.4 %
:PROS 34->65|PS01081|HTH_TETR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56468.1 GT:GENE BAD56468.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1774678..1775325) GB:FROM 1774678 GB:TO 1775325 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56468.1 LENGTH 215 SQ:AASEQ MPAVPPMLQRILDKPVADGEKLLESALSAFLDFGIKRTSMGEIARRAGISPATLYRRFESKNELVEAVSVREAQRFVEYIDKRVQTVEGTENQLVEIFVAFITAIAGNELLRRLLRTEPDLILPRLTTEAGPVLAVGRVYLAEKLRELADTDIDADLVAEIMARLALSLALTPDGLIPLADIDAGRDFARRTLLPMVGVHRAQETPNAAATSASS GT:EXON 1|1-215:0| BL:SWS:NREP 1 BL:SWS:REP 19->145|Y2274_MYCBO|8e-09|31.4|105/189| PROS 34->65|PS01081|HTH_TETR_1|PDOC00830| BL:PDB:NREP 1 BL:PDB:REP 21->162|2qwtA|1e-07|27.9|140/167| RP:PDB:NREP 1 RP:PDB:REP 20->202|3c2bB|7e-16|16.4|183/192| RP:PFM:NREP 1 RP:PFM:REP 22->68|PF00440|3e-06|44.7|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 22->68|PF00440|4.1e-18|44.7|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 20->81|1z77A1|2e-12|22.6|62/75|a.4.1.9| HM:SCP:REP 6->94|1t33A1|1e-16|29.5|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 68 OP:NHOMOORG 34 OP:PATTERN -------------------------------------------------------------------- ----1---------75311-12--22111112-3335133-11--------------1----1-114-2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 211 STR:RPRED 98.1 SQ:SECSTR ccTccccccc##cHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHccTTccHHHHHHHHHTTHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHTTHHHHHTTcccccHHHHHHHHHHHHHHHHccHHHccHHTTccHcc## DISOP:02AL 1-21, 202-215| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccc //