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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56474.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  233/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:241 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->218 1hw1A PDBj 1e-14 30.3 %
:RPS:PDB   12->232 1e2xA PDBj 3e-20 21.4 %
:RPS:SCOP  12->76 1e2xA1  a.4.5.6 * 9e-13 32.3 %
:RPS:SCOP  82->225 1e2xA2  a.78.1.1 * 6e-07 16.7 %
:HMM:SCOP  8->81 1hw1A1 a.4.5.6 * 1.6e-16 40.5 %
:RPS:PFM   13->64 PF00392 * GntR 5e-08 50.0 %
:HMM:PFM   13->74 PF00392 * GntR 5.6e-20 46.8 62/64  
:HMM:PFM   103->225 PF07729 * FCD 5e-13 28.1 121/125  
:BLT:SWISS 1->225 Y601_MYCBO 2e-26 37.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56474.1 GT:GENE BAD56474.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1779773..1780498 GB:FROM 1779773 GB:TO 1780498 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56474.1 LENGTH 241 SQ:AASEQ MEFAVVGRTAVSDAVFGQLVDAILTGRIAPDEPLPAERELAETFQVNRHAVREALKRVQQSGLVRVAQGGKTRVLDWRANGGLDLLSALARSGSVPAQRILRDIAEMRRSVAADSARLCAERAEPRRVDTIVAAAAAYPEPTAALDDLISGDLAFWTAVIDGSGNLAYRLALNTLVAGYTDIGWETIVRLGLNREYLDRARHRELADRIAARDPEGAHRHAHALLSGLVDALSGEFVVTEA GT:EXON 1|1-241:0| BL:SWS:NREP 1 BL:SWS:REP 1->225|Y601_MYCBO|2e-26|37.4|219/240| SEG 133->144|aaaaaypeptaa| BL:PDB:NREP 1 BL:PDB:REP 10->218|1hw1A|1e-14|30.3|195/226| RP:PDB:NREP 1 RP:PDB:REP 12->232|1e2xA|3e-20|21.4|215/222| RP:PFM:NREP 1 RP:PFM:REP 13->64|PF00392|5e-08|50.0|52/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 13->74|PF00392|5.6e-20|46.8|62/64|GntR| HM:PFM:REP 103->225|PF07729|5e-13|28.1|121/125|FCD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 12->76|1e2xA1|9e-13|32.3|65/73|a.4.5.6| RP:SCP:REP 82->225|1e2xA2|6e-07|16.7|138/149|a.78.1.1| HM:SCP:REP 8->81|1hw1A1|1.6e-16|40.5|74/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 381 OP:NHOMOORG 234 OP:PATTERN -------------------------------------------------------------------- ----1---------1-122-2---1222222111113212------------1-1-------2-1---1-------------3------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------1-1-1111111-1---------1---------11-1---1-1-------------------1----------------------2------1--12--322-11265244-2---111---1111--------1-----------------------------------------------1----11------11-------11-2-----1---1111-3-3------------------------3-1---1-------2-2--22-1-----1-----------------------------11-111112211121112122311111112----1--------33221222222222222-2222222222222222222222221122222222222222222222222121-111111111111---1------------1---------------1----------2-11112212222331232----------1---22222--2--------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 96.3 SQ:SECSTR HcccccccHHHHHHHHHHHHHHHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGGHHHHHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHH######### DISOP:02AL 1-10, 239-241| PSIPRED ccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcc //