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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56478.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  193/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:345 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   146->345 1ijiA PDBj 1e-13 29.9 %
:RPS:PDB   145->343 3cq6A PDBj 1e-17 19.3 %
:RPS:SCOP  146->345 1fg3A  c.67.1.1 * 2e-32 26.6 %
:HMM:SCOP  17->341 1uu1A_ c.67.1.1 * 2.5e-59 34.5 %
:RPS:PFM   146->326 PF00155 * Aminotran_1_2 1e-08 32.0 %
:HMM:PFM   39->339 PF00155 * Aminotran_1_2 9e-34 29.5 298/363  
:BLT:SWISS 4->328 Y2256_MYCBO 2e-58 49.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56478.1 GT:GENE BAD56478.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1782753..1783790 GB:FROM 1782753 GB:TO 1783790 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD56478.1 LENGTH 345 SQ:AASEQ MPSDTVDHAMLRHHGDVDARPGMLDFAVNVQGSAPPPWLRARLAARLDDLGRYPAATDHAAAVAAVAARHGRDTAEVLLLAGAAEGFALLPRLAPRLAAVIHPSFTEPELALRQAGVPVTRVVLDRPYTLDPAAVPAAADLVVVGNPTNPTSVLHPADTLRALRRPGRLVVVDEAFADAVPGEPESLAGWSVPDVLVLRSLTKTWALAGLRCGYVLGHPELLARLGHGRPHWPLGTLQLEAVTATAEPAALAEAEQRAREIADERAAMVERLTALGIEVHTPAHGPFLLLRLADGELARKHLAEQGIAVRRADTFPGLGPDHLRVAVRGSADVDRLVEGLRSAGV GT:EXON 1|1-345:0| BL:SWS:NREP 1 BL:SWS:REP 4->328|Y2256_MYCBO|2e-58|49.4|324/364| SEG 34->47|apppwlrarlaarl| SEG 55->68|aatdhaaavaavaa| SEG 75->99|aevlllagaaegfallprlaprlaa| SEG 130->144|ldpaavpaaadlvvv| SEG 240->267|eavtataepaalaeaeqrareiaderaa| BL:PDB:NREP 1 BL:PDB:REP 146->345|1ijiA|1e-13|29.9|197/354| RP:PDB:NREP 1 RP:PDB:REP 145->343|3cq6A|1e-17|19.3|192/363| RP:PFM:NREP 1 RP:PFM:REP 146->326|PF00155|1e-08|32.0|181/341|Aminotran_1_2| HM:PFM:NREP 1 HM:PFM:REP 39->339|PF00155|9e-34|29.5|298/363|Aminotran_1_2| GO:PFM:NREP 3 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 1 RP:SCP:REP 146->345|1fg3A|2e-32|26.6|199/355|c.67.1.1| HM:SCP:REP 17->341|1uu1A_|2.5e-59|34.5|313/330|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 201 OP:NHOMOORG 196 OP:PATTERN --------------------------------------------1--1-------------------- ----1-11----1-11111-1---1-111111-1111111--------------------11111111111-----------------11---------------1-------------------1--1--1-11-----------1111111--1121221--111111111111111111----------1--------------------------111---------11---------------------------------------------------------------------------------------------------------------------------111------1----------------------1-------------------------------------11-1-----------11-11-----------------------------------------------------------111-11----------------1-2-1---121-----------------11----------11-1------1--11-----1--11-1-----------------------------------------------------------1------1------------11---111111111111-11111111111111111111111111-1111111111111111111111111--------------1----------------111-11---------------------11-1---1---------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 246 STR:RPRED 71.3 SQ:SECSTR ###################################################################################################EcccccHHHHHHHHHTTcEEEEEcccTTccccGGGccHHHHHHEEEcccTTTcccccHHHHHHHHHcccEEEEEcTTGGGcccccGGGGTTTcTTTEEEEEEcccTccGGGccEEEEEcHHHHHHHHTTccTTcccHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHTcEEEcccccEEEEEccccHHHHHHHHHHTTEEccEGGGGccccTTcEEEEcccHHHHHHHHHHHHHHHc DISOP:02AL 1-2| PSIPRED cccccHHHHHHHccccccccccEEEcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHEEEEccHHHHHHHHHHHccccEEEEccccccHHHHHHHcccEEEEEEccccccccHHHHcccccEEEEEcccccccccccHHHHHHHHHcccEEEEEccHHHHccccccHHHHHHcccEEEEEcccHHHccHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccEEEEEcccHHHHHHHHHHcccEEEEccccccccccEEEEEEccHHHHHHHHHHHHHccc //