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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56485.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  66/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:286 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   156->237 3jsjC PDBj 5e-04 30.5 %
:RPS:PDB   99->233 3bkkA PDBj 3e-04 12.7 %
:RPS:PFM   87->184 PF04111 * APG6 6e-05 25.5 %
:RPS:PFM   222->278 PF02591 * DUF164 5e-08 56.4 %
:HMM:PFM   222->278 PF02591 * DUF164 1.5e-20 47.3 55/56  
:HMM:PFM   73->206 PF04156 * IncA 6.5e-05 24.2 120/191  
:BLT:SWISS 49->280 Y2229_MYCTU 1e-38 37.1 %
:COIL
:REPEAT 2|47->127|131->214

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56485.1 GT:GENE BAD56485.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1789100..1789960 GB:FROM 1789100 GB:TO 1789960 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56485.1 LENGTH 286 SQ:AASEQ MAKGAWSGFAGEAAACGVRSRLGCRGGRWPHPSIVCRSSPPLNVEPSIQAKLLQLAAVDAELTRIAHRRTVLPEQQEVARLEARRNEHKDAAVKVEIVLDDLDRDIKKLEGEIEAVRKREERDRGMLTSGSVGAKQLSEIQHELGSLERRRGVLEDELLEVMERREASASDHDHAGAQLTRTEQELADAQRQRDEALADLDVAQARCENDRGELVGLFPDELLAVYDRQRAQRGVGAALLQARRCGACRIELDRGEIARIAKTAADEVVRCPECGAILVRTKESGL GT:EXON 1|1-286:0| BL:SWS:NREP 1 BL:SWS:REP 49->280|Y2229_MYCTU|1e-38|37.1|232/245| COIL:NAA 114 COIL:NSEG 2 COIL:REGION 86->122| COIL:REGION 134->210| NREPEAT 1 REPEAT 2|47->127|131->214| BL:PDB:NREP 1 BL:PDB:REP 156->237|3jsjC|5e-04|30.5|82/180| RP:PDB:NREP 1 RP:PDB:REP 99->233|3bkkA|3e-04|12.7|126/586| RP:PFM:NREP 2 RP:PFM:REP 87->184|PF04111|6e-05|25.5|98/327|APG6| RP:PFM:REP 222->278|PF02591|5e-08|56.4|55/56|DUF164| HM:PFM:NREP 2 HM:PFM:REP 222->278|PF02591|1.5e-20|47.3|55/56|DUF164| HM:PFM:REP 73->206|PF04156|6.5e-05|24.2|120/191|IncA| GO:PFM:NREP 1 GO:PFM GO:0006914|"GO:autophagy"|PF04111|IPR007243| OP:NHOMO 66 OP:NHOMOORG 66 OP:PATTERN -------------------------------------------------------------------- -1--111111111-11111-1111111-111111111111111111--11111111-11111111111111--------111------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 167 STR:RPRED 58.4 SQ:SECSTR ######################################################################cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHHTTcHccTTcccHHHHHHHHHHTccGGGGHHccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcTTccEEETTTHHHHHHHcccHHHHHTTc################################################# DISOP:02AL 1-6, 33-46, 121-135, 285-286| PSIPRED cccccccccccHHHHHHHHHHHcccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHEEccccEEEEEEccHHHHHHHHHcccccccccccccEEEEEcccccc //