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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56492.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  642/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:477 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   54->358 2vnuD PDBj 4e-16 30.8 %
:RPS:PDB   44->477 3bzcA PDBj 1e-11 10.5 %
:RPS:SCOP  46->406 2vnuD4  b.40.4.16 * 8e-62 26.0 %
:RPS:PFM   46->358 PF00773 * RNB 7e-30 34.4 %
:HMM:PFM   46->359 PF00773 * RNB 1.4e-39 30.9 301/326  
:BLT:SWISS 46->358 RRP44_HUMAN 2e-23 30.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56492.1 GT:GENE BAD56492.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1795792..1797225 GB:FROM 1795792 GB:TO 1797225 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56492.1 LENGTH 477 SQ:AASEQ MELHQRIVSAPVDFGAIRSEFGLASAYPAEAIAEARDAADAFAGTRVDRTDIDLVTIDPPGALDLDQALCLRRTQTGFLLHYAIADVGAVIAPDGALARESGARGQTFYLPDGTVPLHPPVLAEDAASLLPDRVRPAALWTIELDEAAEPVHYEVTRALVRSRARLDYAGVQADADAGRLHPSIAALPEFGTRRIEAGLARGAIGLRLPAQSVVRDGANHGHWRLVLEPRTAADDWNEQVSLLTGMCAARIMLDTPAPERIGLLRTMPSPPESAVASLRRTAAALGVPWPADVPVGRLLAGLDPNSPAGLVLMSEATSLLRGAAYTILTGADGEESLHHSGLGAPYAHVTAPLRRLSDRFTTEICLARCAGTEVPSWVRAGLAAAADTMKRTDGLANKVDRACIDLTEATLLAPRIGTEFEASVLRAAEGNRPAEIFVADPPLLGPCTGEPPEGQRVRVTLTTADPVSRTIGFAYRA GT:EXON 1|1-477:0| BL:SWS:NREP 1 BL:SWS:REP 46->358|RRP44_HUMAN|2e-23|30.3|307/958| SEG 24->43|asaypaeaiaeardaadafa| BL:PDB:NREP 1 BL:PDB:REP 54->358|2vnuD|4e-16|30.8|289/676| RP:PDB:NREP 1 RP:PDB:REP 44->477|3bzcA|1e-11|10.5|427/730| RP:PFM:NREP 1 RP:PFM:REP 46->358|PF00773|7e-30|34.4|299/327|RNB| HM:PFM:NREP 1 HM:PFM:REP 46->359|PF00773|1.4e-39|30.9|301/326|RNB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00773|IPR001900| GO:PFM GO:0004540|"GO:ribonuclease activity"|PF00773|IPR001900| RP:SCP:NREP 1 RP:SCP:REP 46->406|2vnuD4|8e-62|26.0|358/416|b.40.4.16| OP:NHOMO 1071 OP:NHOMOORG 832 OP:PATTERN ------------------------11111111--------------1--------------------- 111-11-11111--1---------------------1111-----111----111111----1---11----------1-11111111---111111--1---1-11-11111111111111111111-1111-11----------6-13--112111-----11111212------------22222----1----------------11------1111-11-11111111----1-----------11111111111111111111111-1112--1111111-11111111111111111111111111---11----1111111111111111--111111111-1111-1-----111111111-11-11-11-1111111111111-1111--1-----1---11111111111-111-11-1111111-1-11-111111111111111111-1111------------------------------12-1111111111111111111111111111111111111111111--1221-111111111111111111111111111212111111111-11111111-1122--11111-----1-1-------11111112221221122111111111111111111111-1111-1-----21211212222222222-2222222222222222222222122221111111111111111122222221-111111111111--2111111111111321222212222122112111111111112111111111111111111111111111222222222132221111111111111111-1---------------11----1--11--11111-111-1---11-1111111--1 ----212-312111111111111111111111111111-1111111-111111111111111111111-1111111111111111111-2221222212111224-12338-31315-21114122-324H22433-2-1222112112142131242221112322111111112--3F3321421-31222111211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 434 STR:RPRED 91.0 SQ:SECSTR ###########################################ccccccEEEEEEEcccccTTcccHHHHHHHHHTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEEEEEGccHHHHHHHHHHHHHHHTccEEEEEccTTHEEEccHHHHHHHHcHHHHHHcTTccHHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHEETHHHHHHHHcEETTTccHHHHHTcTTccHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccccGGGGccccGGGHHHHHHHHHHHTccHHHcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEcccEEEEETTTccccccccHHHTccccccEEEEETTTTEEEEcccc DISOP:02AL 36-42| PSIPRED cEEEccccccHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHcccHHHcEEEEEccccccccccEEEEEEccccEEEEEEEccHHHHcccccHHHHHHHHHccEEEEcccccccccHHHHHHHHccccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEEccccccccccEEcccccHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEcccEEEEEEccccccccEEEEEEEEEEccccEEEEEEcc //