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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56504.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  21/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:226 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->99 2np5C PDBj 2e-06 40.5 %
:RPS:PDB   23->209 3br6A PDBj 3e-15 11.6 %
:RPS:SCOP  23->78 1z77A1  a.4.1.9 * 1e-12 30.4 %
:RPS:SCOP  92->209 1pb6A2  a.121.1.1 * 2e-07 18.6 %
:HMM:SCOP  9->91 1t33A1 a.4.1.9 * 6.3e-15 30.5 %
:HMM:SCOP  91->216 1pb6A2 a.121.1.1 * 3.8e-21 26.2 %
:RPS:PFM   25->67 PF00440 * TetR_N 1e-05 46.5 %
:RPS:PFM   94->177 PF08362 * TetR_C_3 1e-04 43.3 %
:HMM:PFM   25->70 PF00440 * TetR_N 2.8e-14 41.3 46/47  
:HMM:PFM   93->215 PF08362 * TetR_C_3 0.0002 18.9 122/143  
:BLT:SWISS 33->130 RUTR_SHIFL 9e-06 34.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56504.1 GT:GENE BAD56504.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1807213..1807893 GB:FROM 1807213 GB:TO 1807893 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56504.1 LENGTH 226 SQ:AASEQ MESTAARKPRGRPPAGGSPASTDQIMAAALRVFARDGFAGASVAAINRELGVSHNLIHQRFGTKEALWFAVVDWIFARATAVLTAPARRSPLAPLEEFRRGIVRFVELQADHPDVVRLISMESAIDGPRLAYLYDKHIEPMLVRLAEPLKPLVQQKILTRNDLRSIHFLIAHGATAPFSALPLALRMAPGDPRSPSALRRHAHFVADMIVAGVEAEAARAGRTITT GT:EXON 1|1-226:0| BL:SWS:NREP 1 BL:SWS:REP 33->130|RUTR_SHIFL|9e-06|34.4|96/212| SEG 5->17|aarkprgrppagg| SEG 210->222|vagveaeaaragr| BL:PDB:NREP 1 BL:PDB:REP 21->99|2np5C|2e-06|40.5|79/180| RP:PDB:NREP 1 RP:PDB:REP 23->209|3br6A|3e-15|11.6|181/185| RP:PFM:NREP 2 RP:PFM:REP 25->67|PF00440|1e-05|46.5|43/47|TetR_N| RP:PFM:REP 94->177|PF08362|1e-04|43.3|67/143|TetR_C_3| HM:PFM:NREP 2 HM:PFM:REP 25->70|PF00440|2.8e-14|41.3|46/47|TetR_N| HM:PFM:REP 93->215|PF08362|0.0002|18.9|122/143|TetR_C_3| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF08362|IPR013573| GO:PFM GO:0016564|"GO:transcription repressor activity"|PF08362|IPR013573| RP:SCP:NREP 2 RP:SCP:REP 23->78|1z77A1|1e-12|30.4|56/75|a.4.1.9| RP:SCP:REP 92->209|1pb6A2|2e-07|18.6|118/126|a.121.1.1| HM:SCP:REP 9->91|1t33A1|6.3e-15|30.5|82/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 91->216|1pb6A2|3.8e-21|26.2|126/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 24 OP:NHOMOORG 21 OP:PATTERN -------------------------------------------------------------------- --------------1---------------------1--------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1--------1-------------------------------------------------------------------211-12-----11-1------2-1---1------------------------------------1----------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------1----1--------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 192 STR:RPRED 85.0 SQ:SECSTR #################cHHHHHHHHHHHHHHHHHHcTTTccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHTT################# DISOP:02AL 1-23, 220-226| PSIPRED ccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccc //