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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56512.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  127/915 : Eukaryota  142/199 : Viruses  0/175   --->[See Alignment]
c.56.5d.58.19
:449 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   64->173 1q7lC PDBj 4e-13 37.3 %
:RPS:PDB   7->440 3dljB PDBj 6e-24 14.3 %
:RPS:SCOP  2->184 1vgyA1  c.56.5.4 * 4e-20 20.0 %
:RPS:SCOP  276->350 1ysjA2  d.58.19.1 * 2e-08 25.3 %
:HMM:SCOP  3->440 1lfwA1 c.56.5.4 * 2.2e-44 31.4 %
:RPS:PFM   75->199 PF01546 * Peptidase_M20 1e-05 36.7 %
:HMM:PFM   76->436 PF01546 * Peptidase_M20 5.2e-26 30.5 151/171  
:BLT:SWISS 2->436 CBPS2_DICDI 3e-71 36.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56512.1 GT:GENE BAD56512.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1816671..1818020) GB:FROM 1816671 GB:TO 1818020 GB:DIRECTION - GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD56512.1 LENGTH 449 SQ:AASEQ MDDATAERLAAALRCATVSGTGERADDSADGEFVRLAAHLEACFPRVHAELELERFGHSRLYRWPGVEPERVSAILLAHQDVVPAGDGWTHPPFAGVVDDGFIWGRGAIDDKSRVLAILEAVEAALAAGVRPRHTVYLAFGHDEEVFGDAGAVLMARRLRDAGVRAELLLDEGGVITEGVADGVSTPVASIMVGEKGYATVRLSVRETGGHSSMPGRQTAVGRIARAVARVQDRPLPLRLTPVIADMLARLRTVMPPARRVLLGAAGVAGPVITRVMAARPQTEALVRTTTAPTVIRGGVKANVLPQHAEALVNFRILPGDSVDGVLAHCRRVIRDRGVTVELVGMASEPSRTERPGPAFDLVARLARQVVPGVAVTSGLVPGATDSRHYDGLAATRCNFAPIVLSEADLATIHGTDERISRVNYARLIEFNRRLIGELAAGPIGEEQR GT:EXON 1|1-449:0| BL:SWS:NREP 1 BL:SWS:REP 2->436|CBPS2_DICDI|3e-71|36.3|432/519| SEG 115->128|vlaileaveaalaa| SEG 220->231|avgriaravarv| BL:PDB:NREP 1 BL:PDB:REP 64->173|1q7lC|4e-13|37.3|110/190| RP:PDB:NREP 1 RP:PDB:REP 7->440|3dljB|6e-24|14.3|419/467| RP:PFM:NREP 1 RP:PFM:REP 75->199|PF01546|1e-05|36.7|120/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 76->436|PF01546|5.2e-26|30.5|151/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 2 RP:SCP:REP 2->184|1vgyA1|4e-20|20.0|170/262|c.56.5.4| RP:SCP:REP 276->350|1ysjA2|2e-08|25.3|75/96|d.58.19.1| HM:SCP:REP 3->440|1lfwA1|2.2e-44|31.4|255/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 469 OP:NHOMOORG 282 OP:PATTERN 111--1-----------1--------------------------1-11--------11111------- -16-21--111---21111-11111111111111112111111111-1111-111112--11212212331-------11------------------------1---1------------------------------------2--------------------------------------------1------------------1------------------------------------------------------------------------------------------------------------------------------------1---11---------1--------111111-2--2222--------1----11111----------------------1-------1-----1-12---1------1--------1111-----------------------------------211--11-----------------------------1--111---------2------------------------2--------------------------1--------------------------------------1--------------1-----------------------1----------------------------------------------------------------------------------------111---------------------------------------------------------------------1---------------------111111--------1----------------------------1----1----1- ----222-------3111121-1111211-------------------2232421111111122324322113122113222224311-464134254543-1----1-1913114311-122132212AA2-334-2113124-1212121121112121411124712--212122-----11---212---1--21 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 442 STR:RPRED 98.4 SQ:SECSTR #HHHHHHHHHHHHTcccccccHcccHHHHHHHHHHHHHHHHHHHHHTTcEEEEEcccccEEEEEEcccTTccEEEEEEEcccccccGTccccTTccEEETTEEEcTTTTTTHHHHHHHHHHHHHHHHTTcccccEEEEEEEccGGGTcTTHHHHHHHTTTTTTTTccEEEEccccTccEEEccccccEEEEEEcEEEEEEEEEEcccccEETTTTTTccccHHHHHHHHHTTcccTTccccccccHHHHHHHHTccccHHHHHHHHTccccccccHHHHHHHHccEEEEEEEEccccccccccEEccEEEEEEEEEEcTTccHHHHHHHHHHHHHHcEHHHTTTcccEEEEEEEEEEccEEcHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccEEEcccccTTEEEccTTcTTcEEEHHHHHHHHHHHHHHHHHHHccT###### DISOP:02AL 444-449| PSIPRED ccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEEEcccccccEEEEEccccccccccccccccccEEEEccEEEEccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccEEEcEEEEcccccccccccccEEcHHHHHHHHHHHHHHHHHHHccccccccc //