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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56519.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  3/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:812 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   358->618 3c46B PDBj 8e-06 8.8 %
:RPS:SCOP  424->532 1b1yA  c.1.8.1 * 2e-04 11.0 %
:RPS:PFM   527->570 PF07404 * TEBP_beta 8e-04 34.1 %
:BLT:SWISS 242->571 MUC1_HUMAN 3e-14 32.3 %
:TM
:REPEAT 6|348->392|393->425|426->458|459->491|492->524|525->559
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56519.1 GT:GENE BAD56519.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1825080..1827518 GB:FROM 1825080 GB:TO 1827518 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56519.1 LENGTH 812 SQ:AASEQ MLVIDDDTTIAAAGQLVLDWMRTWTGQFVIVGLAVPGDRLHGRLDGHRGDLVVLTPRLTLVMEVRGTAPDARDGVLSVRADGRWRLSGYDGDPIPADEPATDAFDRVSGHVATLAELAHRHAPDARVEGLVVVVPPGESDIRVTAGSGRPRCGVVVAEDSADLRAWFHRTAGRRLVWSAEDAHGLLADLGMGEAVSVDDLAAEGFPTRKRLRYLASPEYAAAESAARRPGGHGAKERAVLRPGDLAHLRAGLVADPPGRPYSASSFAAAPARGDEGGVDSAADVAPRAGEPVAHRSAPLAEIRSGAANGEYADDSAMPWVGARGSVAGSRAAVGPSTGTPRELVAVNPLPDPTAPAGCADSERRVTHPAVQARPDAATDQPGDAAAPRSGPNSKPGTPQPAGPQARAHAATDQPGTTAAPGSGPNPKPGMPQPAGPQARLDAAPDQPGDAAAPRSGPKPKPGVPQPAGPQARPDAAPDEPGTTAAPGSGPNPKPGMPQPAGPQARLDAAPDQPGDTAAPRSGPNPEPGVPQPAAESRRRSDRNPVGAASDAIVVRGPKTPLPALPEPDGEAFFTDDWSSWIEAPVDAGVRPLGGVPDGRPSGNPPTTPTVRQRALRLIAPARTMRDSPPPTPPQRPAWLSTATATPRPAPRDRRTPPTPSTPTPPRTGPVGVSRPPSPRAVLHEMRARARLLTDRTPTRRSTTPPVNPRRLLPVTAAAPRPLAHPVPGDPRTRPSAMPPGSPRSVADSLPPASEQSTHRRQQAAALTLIAALLGTIWLLSSACSAPPRSAVDAPQPAPITESQATAGVRPMP GT:EXON 1|1-812:0| BL:SWS:NREP 1 BL:SWS:REP 242->571|MUC1_HUMAN|3e-14|32.3|297/1255| TM:NTM 2 TM:REGION 14->36| TM:REGION 764->786| NREPEAT 1 REPEAT 6|348->392|393->425|426->458|459->491|492->524|525->559| SEG 127->138|veglvvvvppge| SEG 213->231|ylaspeyaaaesaarrpgg| SEG 262->271|sassfaaapa| SEG 320->334|vgargsvagsraavg| SEG 441->453|daapdqpgdaaap| SEG 628->636|ppptppqrp| SEG 641->669|tatatprpaprdrrtpptpstptpprtgp| SEG 686->710|rararlltdrtptrrsttppvnprr| SEG 763->779|aaaltliaallgtiwll| RP:PDB:NREP 1 RP:PDB:REP 358->618|3c46B|8e-06|8.8|216/1094| RP:PFM:NREP 1 RP:PFM:REP 527->570|PF07404|8e-04|34.1|44/370|TEBP_beta| GO:PFM:NREP 2 GO:PFM GO:0000781|"GO:chromosome, telomeric region"|PF07404|IPR010874| GO:PFM GO:0042162|"GO:telomeric DNA binding"|PF07404|IPR010874| RP:SCP:NREP 1 RP:SCP:REP 424->532|1b1yA|2e-04|11.0|109/500|c.1.8.1| OP:NHOMO 11 OP:NHOMOORG 9 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------1----------------------------------------------------------------------------3---------------11-------------1----------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 292 STR:RPRED 36.0 SQ:SECSTR ##############################################################################################################################################################################################################################################################################################################################################HHHHHHHHcccccccHHHHHHHHGcTTHHHHHHccccccccEETTcccccccEETTEEEEEccHHHHHHcccccGGGEEEEHHHHHHHHHHcccEEcHHHHHHHHEEEEcccccEEEEEEEcHHcHHHHHHHHccccccGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccGGGccEEccEEEcTTccTTcGccEEEcccccTTTcHHHHTTEEcccEEEccccTHHHHHHTcHHHHHHHHHHHHHTTccGGGccHHHHHHHHHHHHHTTTHHHHHHHHHHHHHc########################################################################################################################################################################################## DISOP:02AL 5-6, 209-812| PSIPRED cEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcccccEEcccccccccEEEEcccEEEEEEEccccccccccEEEEEccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //