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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56535.1
DDBJ      :             putative epimerase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  443/915 : Eukaryota  65/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:300 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->55 3h2sA PDBj 9e-06 38.9 %
:RPS:PDB   2->285 2b69A PDBj 3e-10 12.8 %
:RPS:SCOP  1->291 1kbzA  c.2.1.2 * 5e-13 12.1 %
:HMM:SCOP  2->283 1eq2A_ c.2.1.2 * 1.1e-34 30.7 %
:RPS:PFM   247->291 PF08338 * DUF1731 4e-09 56.8 %
:HMM:PFM   247->294 PF08338 * DUF1731 9.3e-19 51.1 47/48  
:HMM:PFM   3->218 PF01370 * Epimerase 5.4e-15 24.9 213/238  
:BLT:SWISS 3->291 Y2239_MYCBO 2e-84 55.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56535.1 GT:GENE BAD56535.1 GT:PRODUCT putative epimerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1840800..1841702) GB:FROM 1840800 GB:TO 1841702 GB:DIRECTION - GB:PRODUCT putative epimerase GB:PROTEIN_ID BAD56535.1 LENGTH 300 SQ:AASEQ MKVVIAGSSGLVGTALVAALRRDGHEVTRLVRRPVAARDEFRWDPARAELDPRALRGADAVVNLCGASLGRRRWTGSFKQELRDSRITPTDVLSAEVAAAGVPVLVNASGVHYYGGATGDRVVDENSPAGTGFLATLCRDWEAATERARAAGARTVLLRSAVVLSRHGGMLGMLTPLYNLGLGGRLGSGRQYLPWISLDDEIGAIVFTLTHDALRGPVNLAGPAPVTNAEFSRALARALHRPSALMVPAFALRAVVGEFADEAILRGPRAIPAALEEAGYSFRHPTIGTALTAIFGPDGR GT:EXON 1|1-300:0| BL:SWS:NREP 1 BL:SWS:REP 3->291|Y2239_MYCBO|2e-84|55.9|288/301| SEG 142->155|eaateraraagart| SEG 177->193|lynlglggrlgsgrqyl| BL:PDB:NREP 1 BL:PDB:REP 2->55|3h2sA|9e-06|38.9|54/211| RP:PDB:NREP 1 RP:PDB:REP 2->285|2b69A|3e-10|12.8|274/302| RP:PFM:NREP 1 RP:PFM:REP 247->291|PF08338|4e-09|56.8|44/48|DUF1731| HM:PFM:NREP 2 HM:PFM:REP 247->294|PF08338|9.3e-19|51.1|47/48|DUF1731| HM:PFM:REP 3->218|PF01370|5.4e-15|24.9|213/238|Epimerase| RP:SCP:NREP 1 RP:SCP:REP 1->291|1kbzA|5e-13|12.1|282/298|c.2.1.2| HM:SCP:REP 2->283|1eq2A_|1.1e-34|30.7|267/307|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 595 OP:NHOMOORG 510 OP:PATTERN --------------------------------------------------------------11---- 12213111111-1112211-1211221111112222332211-121111221222111--1111112111------------1-----111--111---1-211121111--------------11111111111111111-----11111111111111111111-11111111111111111-------11111111111-111111111111111-1111111111111111111111111111111111-----------------------------------------------------------------------------------------------------1111-1-------------1-1-----------111--------------------------------------------------------------------------------------------------------------1-----1111----------------1-----1----------------1---------------------122221111111111---------111121-11-------------------11-----11111-111111111111111111111111-----1-------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11112-1111111111111111111-11111-11111111122111111111111111--1111111-111111111--111111111111----111122-----------------------------------------------11 -1--11--------------------------------------------------------------------------------------------------------2211-1--11111-23-213E1-3141---21-11-111-11-11--111-112111111---1-1112I111111121-111------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 296 STR:RPRED 98.7 SQ:SECSTR cEEEEETTTcHHHHHHHHHHTTcEEEEEEccccccGGGTGGGTTcTTEEEEEccTTccccccccEEEEccccccHHHHTcHHHHHHHHHHHHHHHHHHHHHTcEEEEEEEGGGGccccccccccccccccTTHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEcTTcTcccHHHHHHHHHHTccEEEEcccccEEEcEEHHHHHHHHHHHccccccEEEccccEEEHHHHHHHHHHHHTccccEEEEcccTTccccccccHHHHHHTccccHHHHHHccccccccHHHHHGGTcT#### DISOP:02AL 299-300| PSIPRED cEEEEEccccHHHHHHHHHHHHcccEEEEEEccccccccEEEEEcccccHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccEEEcccccHHHHHHHHHHHHccccccccccEEccEEHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHccccccHHHHHHcccccccccHHHHHHHHHccccc //