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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56540.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  54/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:262 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   50->220 2optA PDBj 6e-11 31.0 %
:RPS:PDB   50->239 3b6aB PDBj 1e-15 25.7 %
:RPS:SCOP  51->116 2g7lA1  a.4.1.9 * 3e-10 34.8 %
:RPS:SCOP  122->261 2g7lA2  a.121.1.1 * 2e-10 22.4 %
:HMM:SCOP  50->121 1zk8A1 a.4.1.9 * 1.1e-10 33.3 %
:HMM:SCOP  121->261 2g7gA2 a.121.1.1 * 7e-21 34.1 %
:RPS:PFM   60->103 PF00440 * TetR_N 6e-04 36.4 %
:RPS:PFM   122->196 PF02909 * TetR_C 4e-05 43.2 %
:HMM:PFM   59->103 PF00440 * TetR_N 1.6e-12 40.0 45/47  
:HMM:PFM   120->256 PF02909 * TetR_C 1.6e-09 22.7 132/139  
:HMM:PFM   2->32 PF01753 * zf-MYND 5e-05 33.3 21/40  
:BLT:SWISS 57->239 Y1388_MYCBO 3e-11 29.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56540.1 GT:GENE BAD56540.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1846251..1847039) GB:FROM 1846251 GB:TO 1847039 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56540.1 LENGTH 262 SQ:AASEQ MCPVCRRPVPQPPRGRPRRYCSRSCQARAYRSRRAGRAAGTPVDRPPRPARLTRVGIARAAVALADRDGIERLTLRRLAGDLGVATAALYRHYPDRDALLGAMTELVLAETEPPEADSRPADWRAALTHDALTEWRRYRTHPWLLPVLARIRPPAGPVLFDSLEATFATLDRLGLSGAQLLNTYLALSGLVQGLALLWYADRERPPGAPPPELVELIDPVARPTLHKIFAGGPAEPDVERLIGDAVDLLLTGIEHRREEGAP GT:EXON 1|1-262:0| BL:SWS:NREP 1 BL:SWS:REP 57->239|Y1388_MYCBO|3e-11|29.3|181/261| SEG 2->19|cpvcrrpvpqpprgrprr| SEG 27->39|arayrsrragraa| BL:PDB:NREP 1 BL:PDB:REP 50->220|2optA|6e-11|31.0|168/209| RP:PDB:NREP 1 RP:PDB:REP 50->239|3b6aB|1e-15|25.7|187/209| RP:PFM:NREP 2 RP:PFM:REP 60->103|PF00440|6e-04|36.4|44/47|TetR_N| RP:PFM:REP 122->196|PF02909|4e-05|43.2|74/140|TetR_C| HM:PFM:NREP 3 HM:PFM:REP 59->103|PF00440|1.6e-12|40.0|45/47|TetR_N| HM:PFM:REP 120->256|PF02909|1.6e-09|22.7|132/139|TetR_C| HM:PFM:REP 2->32|PF01753|5e-05|33.3|21/40|zf-MYND| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF02909|IPR004111| GO:PFM GO:0016566|"GO:specific transcriptional repressor activity"|PF02909|IPR004111| RP:SCP:NREP 2 RP:SCP:REP 51->116|2g7lA1|3e-10|34.8|66/68|a.4.1.9| RP:SCP:REP 122->261|2g7lA2|2e-10|22.4|125/133|a.121.1.1| HM:SCP:REP 50->121|1zk8A1|1.1e-10|33.3|72/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 121->261|2g7gA2|7e-21|34.1|132/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 121 OP:NHOMOORG 54 OP:PATTERN -------------------------------------------------------------------- ----8---------32211-11--221111-22-1-8445-536361-------1-----33--3-7133---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------1-111111------------------------------1---------------------------------1-------111-11--------1------1------------------------------------------------------------------------12-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 218 STR:RPRED 83.2 SQ:SECSTR ############################################cccccccccHHHHHHHHHHHHHHTcGGGccHHHHHHHTTccHHHHHHTTccHHHHHHHHHHHHGGGccccccccTTTcHHHHHHHHHHHHHHHHHHcTTHHHHHTTccccccHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHTccTTTcHHHHHTHHHHHcccHHHHHHHHHHHHHHHHHHHHTTH DISOP:02AL 1-2, 18-55, 203-205, 258-262| PSIPRED ccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccc //