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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56567.1
DDBJ      :             putative hydrolase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  481/915 : Eukaryota  3/199 : Viruses  2/175   --->[See Alignment]
d.3.1
:190 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   92->182 2k1gA PDBj 7e-14 48.3 %
:RPS:SCOP  76->189 2evrA2  d.3.1.16 * 7e-29 26.3 %
:HMM:SCOP  68->190 2evrA2 d.3.1.16 * 2.3e-37 47.2 %
:RPS:PFM   92->181 PF00877 * NLPC_P60 8e-21 58.0 %
:HMM:PFM   92->180 PF00877 * NLPC_P60 2.6e-23 46.0 87/105  
:BLT:SWISS 72->190 Y2213_MYCBO 7e-23 42.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56567.1 GT:GENE BAD56567.1 GT:PRODUCT putative hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1871622..1872194) GB:FROM 1871622 GB:TO 1872194 GB:DIRECTION - GB:PRODUCT putative hydrolase GB:PROTEIN_ID BAD56567.1 LENGTH 190 SQ:AASEQ MANNTVKRQAQRVVAAGAVGAATIGAFLLPAAPASAQPVTIPGVGTFEVPNEIPIPAEIPGIQLGQPGPPPFVAPQKTVGELALDAALSKIGSPYVYGAAGPNAFDCSGLVQWSYRQAGLELPRTSGAQLSAGSPVSLDDLRPGDLVSFYGGGHSGLYAGDGNVVHAATSGSPVHIASISSMPVAGARRF GT:EXON 1|1-190:0| BL:SWS:NREP 1 BL:SWS:REP 72->190|Y2213_MYCBO|7e-23|42.9|119/385| SEG 8->22|rqaqrvvaagavgaa| SEG 59->71|ipgiqlgqpgppp| BL:PDB:NREP 1 BL:PDB:REP 92->182|2k1gA|7e-14|48.3|87/129| RP:PFM:NREP 1 RP:PFM:REP 92->181|PF00877|8e-21|58.0|88/100|NLPC_P60| HM:PFM:NREP 1 HM:PFM:REP 92->180|PF00877|2.6e-23|46.0|87/105|NLPC_P60| RP:SCP:NREP 1 RP:SCP:REP 76->189|2evrA2|7e-29|26.3|114/148|d.3.1.16| HM:SCP:REP 68->190|2evrA2|2.3e-37|47.2|123/0|d.3.1.16|1/1|Cysteine proteinases| OP:NHOMO 1243 OP:NHOMOORG 487 OP:PATTERN -------------------------------------------------------------1------ -112A44444444434433-3I224444444497BC779C545F423-4222132112224332654ACA61---111-1632-1111------11---------121-----------------221211--2-111111---31--------------------111--------------22211---423121221121121232322233211434421-4333354121----------1-------34442231121431122311--11111------------111-11-1--------1-----11---2-1-1315633345643527C11132222133-1611641211--121111--311--------------------------------------------------1-----------------------------------------------------------------------11-222222222222222222222222222222222-1222--2222212211121111122222222---12-----1-112312221323222212------21-----1111---1-------1---422221--------11111--11111-11111---1---1------33333334444444344-4444444444444444443333222223333333333333333334434442-333333333333---1---------1112-222-211122-1-------------2-33333334333332322------------------------22212112222222----------------------------------------------------1------ --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1-----1---- --------------1-----------------------------------------------------------------------------------------------1---------------------------------------------------------------- STR:NPRED 100 STR:RPRED 52.6 SQ:SECSTR ##########################################################################################TTcccccccccTTcccHHHHHHHHHHTTcccccccHHHHGGGcEEEcGGGccTTEEEEEEETTEEEEEEETTEEEEEETTTEEEEEEEEEETHEEEEEEc DISOP:02AL 1-15, 36-81| PSIPRED ccccHHHHHHHHcEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHcccccccccHHHHHccccccHHHcccccEEEEccccEEEEEEcccEEEEEccccccEEEEEccccccccEEcc //