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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56568.1
DDBJ      :             putative DNA polymerase III subunit
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  683/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.2.9c.55.3d.226.1
:598 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->198 2p1jB PDBj 7e-20 35.9 %
:BLT:PDB   214->303 1yd6D PDBj 1e-11 36.4 %
:RPS:PDB   23->206 3cg7B PDBj 2e-19 15.2 %
:RPS:PDB   229->277 3egaA PDBj 8e-04 10.2 %
:RPS:SCOP  19->195 1j9aA  c.55.3.5 * 1e-22 16.2 %
:RPS:SCOP  228->307 1ln0A  d.226.1.1 * 7e-17 13.8 %
:HMM:SCOP  15->199 2f96A1 c.55.3.5 * 3.7e-55 50.6 %
:HMM:SCOP  226->310 1mk0A_ d.226.1.1 * 6.4e-15 30.6 %
:HMM:SCOP  395->450 1e52A_ a.2.9.1 * 0.00013 26.8 %
:RPS:PFM   28->185 PF00929 * Exonuc_X-T 5e-17 39.5 %
:RPS:PFM   228->261 PF01541 * GIY-YIG 6e-06 50.0 %
:HMM:PFM   27->185 PF00929 * Exonuc_X-T 7.4e-36 40.8 157/165  
:HMM:PFM   228->265 PF01541 * GIY-YIG 1e-09 36.8 38/80  
:HMM:PFM   411->439 PF02151 * UVR 6.2e-08 37.9 29/36  
:BLT:SWISS 22->561 Y2191_MYCTU e-113 52.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56568.1 GT:GENE BAD56568.1 GT:PRODUCT putative DNA polymerase III subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1872789..1874585 GB:FROM 1872789 GB:TO 1874585 GB:DIRECTION + GB:PRODUCT putative DNA polymerase III subunit GB:PROTEIN_ID BAD56568.1 LENGTH 598 SQ:AASEQ MPAPEPSRAARQLAFDELDTPLYDTTFVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGEFATLVNPGRAIPPAVVQVTGITTALVYAAPRIEAVLPGFLEFAAGAVLVAHNARFDTAFLRAAAARCALPWPDAPVLCTVKLARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVLHALIARVGNQGVHSLTELMDYLPDVSAGQRAKRSFAAGLPTAPGVYLFRGPSDEVLYIGTAVNLRRRVRTYFTGSETRGRMKEMVALATRVDHVVCAHGLEAGVRELRLLVAHAPPYNRRSKFPKRVWWITLTDEAFPRLAVVRTPTPDALGPFTSRQDAVDVAATLAEHAGLRTCTTRLARSAVHDCPPSVVGGCPAARETPCTAAEYAPAPAAVRDLVAGRCDTVLHTMRARIDSAAAAEHFEAAARLRDRMVAVVRALRRTQRLAALARIAELIAAHPDGAGGWEFAVVRYGRLAGAGVAARGTPPMPVVEQIVAAAETVVPDGVAGVGVPDDEVAGLAELVGPPLLGAPPEEVGLIARWLERPGVRIVRTSHGYHEPRCGAGRWSGWVAAAEAAARARPDGADYAERLG GT:EXON 1|1-598:0| BL:SWS:NREP 1 BL:SWS:REP 22->561|Y2191_MYCTU|e-113|52.7|518/645| SEG 113->134|arfdtaflraaaarcalpwpda| SEG 152->167|apsvrlaslarllgas| SEG 391->400|aaeyapapaa| SEG 423->433|aaaaehfeaaa| SEG 440->464|vavvralrrtqrlaalariaeliaa| SEG 475->491|avvrygrlagagvaarg| SEG 508->525|vvpdgvagvgvpddevag| SEG 578->594|aaaeaaararpdgadya| BL:PDB:NREP 2 BL:PDB:REP 26->198|2p1jB|7e-20|35.9|170/171| BL:PDB:REP 214->303|1yd6D|1e-11|36.4|88/96| RP:PDB:NREP 2 RP:PDB:REP 23->206|3cg7B|2e-19|15.2|184/295| RP:PDB:REP 229->277|3egaA|8e-04|10.2|49/214| RP:PFM:NREP 2 RP:PFM:REP 28->185|PF00929|5e-17|39.5|157/163|Exonuc_X-T| RP:PFM:REP 228->261|PF01541|6e-06|50.0|34/80|GIY-YIG| HM:PFM:NREP 3 HM:PFM:REP 27->185|PF00929|7.4e-36|40.8|157/165|Exonuc_X-T| HM:PFM:REP 228->265|PF01541|1e-09|36.8|38/80|GIY-YIG| HM:PFM:REP 411->439|PF02151|6.2e-08|37.9|29/36|UVR| GO:PFM:NREP 3 GO:PFM GO:0004518|"GO:nuclease activity"|PF01541|IPR000305| GO:PFM GO:0005622|"GO:intracellular"|PF01541|IPR000305| GO:PFM GO:0006281|"GO:DNA repair"|PF01541|IPR000305| RP:SCP:NREP 2 RP:SCP:REP 19->195|1j9aA|1e-22|16.2|167/184|c.55.3.5| RP:SCP:REP 228->307|1ln0A|7e-17|13.8|80/92|d.226.1.1| HM:SCP:REP 15->199|2f96A1|3.7e-55|50.6|180/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 226->310|1mk0A_|6.4e-15|30.6|85/97|d.226.1.1|1/1|GIY-YIG endonuclease| HM:SCP:REP 395->450|1e52A_|0.00013|26.8|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| OP:NHOMO 1196 OP:NHOMOORG 712 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 11121-1----22131222-221121222221-3331222222113211111----11112232212---4-1111113212221122--111--12--22223321122--1-1--11111111211222111231332111133---1--11111---------2--1----1-----1--2211211134344444344444444434333344434423333333334322222222112222232222223333331223333333232333332222222222222222222222222222222222211222111222232222222222222332222332223332433132121322222-12411111-----1---11------------------1---1-2-----1----1---------1-111-21111111111111111111-12111------------1-----------1---1-111---1-333233211112222222222332223212111211---1221-11421113212222221124434111-122121111111122212211112211111111111-111111111111-11-----312112111111111121111111111---1321------11-1-112112221222-2222222222222122112111111111111111111111111112111-1--111111111111---------11111-1-1------1-------1--111111112------11223231-1--111111111-1111-----23111111111111111111-11-------11-----2221211---------1111-1---11114222322131-- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 49.0 SQ:SECSTR ############HccccccccccccEEEEEEEEEcccTTccccEEEEEEEEETTTTEEEEEEEEccccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHHcTTcEEEEEcccHHHHTHHHHHHHHTTccccGGGcEEEEHHHHHHcccccccHHHHHHHHHTccccccTTcHHHHHHHHHHHHHHHHHTTccccccEEEEcccGGGGHHHHcHHHHHHHTGcccccccEEEEcTTccEEcccccTTcccccccTTcccccTTcEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHccHHHcc##################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-4, 10-12, 15-16, 584-595| PSIPRED ccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHcccccHHHHHccccHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccHHHccccEEEEEEcccccEEEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHcccccEEEEcccEEEEEEEEccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccEEEEEEEcccEEEEEEEEEccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHHHHccccEEEEEccEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHcc //