[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56573.1
DDBJ      :             putative cytochrome c component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  68/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.3.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   57->98 2zooA PDBj 4e-05 40.0 %
:BLT:PDB   169->246 1c6sA PDBj 3e-05 34.7 %
:RPS:PDB   54->247 1bccD PDBj 2e-16 19.7 %
:RPS:SCOP  55->152 1h31A2  a.3.1.8 * 1e-11 14.3 %
:RPS:SCOP  181->244 1dw0A  a.3.1.1 * 4e-16 31.7 %
:HMM:SCOP  28->149 2mtaC_ a.3.1.1 * 1.3e-16 29.8 %
:HMM:SCOP  149->245 1dw0A_ a.3.1.1 * 4.8e-29 43.3 %
:RPS:PFM   170->244 PF00034 * Cytochrom_C 8e-04 37.3 %
:HMM:PFM   70->144 PF00034 * Cytochrom_C 2.3e-11 29.3 75/91  
:HMM:PFM   172->244 PF00034 * Cytochrom_C 1.8e-11 37.1 70/91  
:HMM:PFM   12->65 PF10099 * RskA 0.00024 24.1 54/175  
:BLT:SWISS 51->287 QCRC_CORDI 9e-93 67.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56573.1 GT:GENE BAD56573.1 GT:PRODUCT putative cytochrome c component GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1877439..1878302 GB:FROM 1877439 GB:TO 1878302 GB:DIRECTION + GB:PRODUCT putative cytochrome c component GB:PROTEIN_ID BAD56573.1 LENGTH 287 SQ:AASEQ MSSSPPSAPEPASPGNGQASKTRKQRRARRRVAGGLALLVGLVGAGFLATALTPEPQVATANQDQSALIREGKQLYETSCITCHGANLQGVPDRGPSLIGVGEAAVYFQVSSGRMPLAANQAQATRKPPKFDAQQIDALGAYIAANGGGPTVVRNPDGSIAQESLRGDDIGRGSELFRMNCASCHNFTGRGGALSSGKYAPPLDPASEQQIYTAMLTGPENMPKFSDRQLTPEEKRDIIAYIKNAAEEKTPGGYGLGGFGPATEGLAIWVVGIVLTVGAAMWIGSRS GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 51->287|QCRC_CORDI|9e-93|67.9|237/281| TM:NTM 2 TM:REGION 32->54| TM:REGION 263->284| SEG 2->14|sssppsapepasp| SEG 26->49|rrarrrvagglallvglvgagfla| SEG 252->260|ggyglggfg| BL:PDB:NREP 2 BL:PDB:REP 57->98|2zooA|4e-05|40.0|40/438| BL:PDB:REP 169->246|1c6sA|3e-05|34.7|75/87| RP:PDB:NREP 1 RP:PDB:REP 54->247|1bccD|2e-16|19.7|178/241| RP:PFM:NREP 1 RP:PFM:REP 170->244|PF00034|8e-04|37.3|75/89|Cytochrom_C| HM:PFM:NREP 3 HM:PFM:REP 70->144|PF00034|2.3e-11|29.3|75/91|Cytochrom_C| HM:PFM:REP 172->244|PF00034|1.8e-11|37.1|70/91|Cytochrom_C| HM:PFM:REP 12->65|PF10099|0.00024|24.1|54/175|RskA| GO:PFM:NREP 3 GO:PFM GO:0005506|"GO:iron ion binding"|PF00034|IPR003088| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00034|IPR003088| GO:PFM GO:0020037|"GO:heme binding"|PF00034|IPR003088| RP:SCP:NREP 2 RP:SCP:REP 55->152|1h31A2|1e-11|14.3|98/111|a.3.1.8| RP:SCP:REP 181->244|1dw0A|4e-16|31.7|60/112|a.3.1.1| HM:SCP:REP 28->149|2mtaC_|1.3e-16|29.8|114/147|a.3.1.1|1/2|Cytochrome c| HM:SCP:REP 149->245|1dw0A_|4.8e-29|43.3|97/0|a.3.1.1|2/2|Cytochrome c| OP:NHOMO 68 OP:NHOMOORG 68 OP:PATTERN -------------------------------------------------------------------- ---1111111111111111-111111111111111111111111111111111111111111111111111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 70.4 SQ:SECSTR #################################################TcccccTTccccccccHHHHHHHHHHHHHTGGGTcccTTccHHHcTTTccHHHHHHHTcEEEEccccccccEEccEEEEccTTcccccccccHHHHHTTTTTccccccccHHHcccTTHcTTTHHHHHHHHTTcccccTTccccccTTcEEcTTcTTcEEcccccccccTTTccccHHTccHHHHHHHHHHHHHHHHcTTcc#################################### DISOP:02AL 1-31, 120-129, 248-253| PSIPRED cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc //